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Q2QNF7

- DAPF_ORYSJ

UniProt

Q2QNF7 - DAPF_ORYSJ

Protein

Diaminopimelate epimerase, chloroplastic

Gene

DAPF

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (24 Jan 2006)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate.

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei142 – 1421By similarity
    Active sitei297 – 2971By similarity

    GO - Molecular functioni

    1. diaminopimelate epimerase activity Source: UniProtKB-EC

    GO - Biological processi

    1. lysine biosynthetic process via diaminopimelate Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    Isomerase

    Keywords - Biological processi

    Amino-acid biosynthesis, Lysine biosynthesis

    Enzyme and pathway databases

    UniPathwayiUPA00034; UER00025.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Diaminopimelate epimerase, chloroplastic (EC:5.1.1.7)
    Short name:
    DAP epimerase
    Gene namesi
    Name:DAPF
    Ordered Locus Names:Os12g0567200, LOC_Os12g37960
    ORF Names:OsJ_035115
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 12

    Organism-specific databases

    GrameneiQ2QNF7.

    Subcellular locationi

    Plastidchloroplast Curated

    GO - Cellular componenti

    1. chloroplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 4444ChloroplastSequence AnalysisAdd
    BLAST
    Chaini45 – 354310Diaminopimelate epimerase, chloroplasticPRO_0000307181Add
    BLAST

    Proteomic databases

    PRIDEiQ2QNF7.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2QNF7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi55 – 595Poly-Ala

    Sequence similaritiesi

    Belongs to the diaminopimelate epimerase family.Curated

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG0253.
    KOiK01778.
    OMAiRISEMEI.

    Family and domain databases

    HAMAPiMF_00197. DAP_epimerase.
    InterProiIPR018510. DAP_epimerase_AS.
    IPR001653. DAP_epimerase_DapF.
    [Graphical view]
    PANTHERiPTHR31689. PTHR31689. 1 hit.
    PfamiPF01678. DAP_epimerase. 2 hits.
    [Graphical view]
    TIGRFAMsiTIGR00652. DapF. 1 hit.
    PROSITEiPS01326. DAP_EPIMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q2QNF7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSSATAAATA TIAAAAAKLA ATPAPAPSRR RLTLRGNPTA RRCVAAMAVS    50
    TPRSAAAAAF LERRESERAL HFVKYQGLGN DFIMVDNRDS AVPKVTPEEA 100
    AKLCDRNFGV GADGVIFVMP GVNGADYTMR IFNSDGSEPE MCGNGVRCFA 150
    RFIAELENLQ GTHSFKIHTG AGLIIPEIQN DGKVKVDMGQ PILSGPDIPT 200
    KLPSTKNEAV VQADLAVDGS TWQVTCVSMG NPHCVTFGTK ELKVLHVDDL 250
    KLSDIGPKFE HHEMFPARTN TEFVEVLSRS HLKMRVWERG AGATLACGTG 300
    ACAVVVAAVL EGRAERKCVV DLPGGPLEIE WREDDNHIYM TGPAEAVFYG 350
    SAVH 354
    Length:354
    Mass (Da):37,830
    Last modified:January 24, 2006 - v1
    Checksum:iD8511696965BD8AD
    GO

    Sequence cautioni

    The sequence BAF30079.2 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DP000011 Genomic DNA. Translation: ABA99594.1.
    AP008218 Genomic DNA. Translation: BAF30079.2. Sequence problems.
    CM000149 Genomic DNA. Translation: EAZ20906.1.
    AK242455 mRNA. No translation available.
    RefSeqiNP_001067060.2. NM_001073592.2.
    UniGeneiOs.21433.

    Genome annotation databases

    GeneIDi4352558.
    KEGGiosa:4352558.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DP000011 Genomic DNA. Translation: ABA99594.1 .
    AP008218 Genomic DNA. Translation: BAF30079.2 . Sequence problems.
    CM000149 Genomic DNA. Translation: EAZ20906.1 .
    AK242455 mRNA. No translation available.
    RefSeqi NP_001067060.2. NM_001073592.2.
    UniGenei Os.21433.

    3D structure databases

    ProteinModelPortali Q2QNF7.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q2QNF7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4352558.
    KEGGi osa:4352558.

    Organism-specific databases

    Gramenei Q2QNF7.

    Phylogenomic databases

    eggNOGi COG0253.
    KOi K01778.
    OMAi RISEMEI.

    Enzyme and pathway databases

    UniPathwayi UPA00034 ; UER00025 .

    Family and domain databases

    HAMAPi MF_00197. DAP_epimerase.
    InterProi IPR018510. DAP_epimerase_AS.
    IPR001653. DAP_epimerase_DapF.
    [Graphical view ]
    PANTHERi PTHR31689. PTHR31689. 1 hit.
    Pfami PF01678. DAP_epimerase. 2 hits.
    [Graphical view ]
    TIGRFAMsi TIGR00652. DapF. 1 hit.
    PROSITEi PS01326. DAP_EPIMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications."
      The rice chromosomes 11 and 12 sequencing consortia
      BMC Biol. 3:20-20(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    5. "Oryza sativa full-length cDNA."
      The rice full-length cDNA consortium
      Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 340-354.
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiDAPF_ORYSJ
    AccessioniPrimary (citable) accession number: Q2QNF7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 23, 2007
    Last sequence update: January 24, 2006
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3