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Q2QNF3

- Q2QNF3_ORYSJ

UniProt

Q2QNF3 - Q2QNF3_ORYSJ

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Protein
Submitted name: 60S ribosomal protein L2, putative, expressed
Gene
LOC_Os12g38000, Os12g0567700, OsJ_36548
Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiREACT_208864. SRP-dependent cotranslational protein targeting to membrane.
REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
60S ribosomal protein L2, putative, expressedImported
Submitted name:
Os12g0567700 proteinImported
Gene namesi
Ordered Locus Names:LOC_Os12g38000Imported, Os12g0567700Imported
ORF Names:OsJ_36548Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 12

Subcellular locationi

GO - Cellular componenti

  1. chloroplast Source: EnsemblPlants/Gramene
  2. cytosolic large ribosomal subunit Source: EnsemblPlants/Gramene
  3. nucleolus Source: EnsemblPlants/Gramene
  4. plasma membrane Source: EnsemblPlants/Gramene
  5. vacuolar membrane Source: EnsemblPlants/Gramene
Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J61electron microscopy5.50A1-261[»]

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0090.
KOiK02938.
OMAiHAIFKSH.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
2.40.50.140. 1 hit.
4.10.950.10. 1 hit.
HAMAPiMF_01320_A. Ribosomal_L2_A.
InterProiIPR012340. NA-bd_OB-fold.
IPR022666. Rbsml_prot_L2_RNA-bd_dom.
IPR014722. Rib_L2_dom2.
IPR002171. Ribosomal_L2.
IPR023672. Ribosomal_L2_arc.
IPR022669. Ribosomal_L2_C.
IPR022671. Ribosomal_L2_CS.
IPR014726. Ribosomal_L2_dom3.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERiPTHR13691. PTHR13691. 1 hit.
PfamiPF00181. Ribosomal_L2. 1 hit.
PF03947. Ribosomal_L2_C. 1 hit.
[Graphical view]
PIRSFiPIRSF002158. Ribosomal_L2. 1 hit.
SUPFAMiSSF50104. SSF50104. 1 hit.
SSF50249. SSF50249. 1 hit.
PROSITEiPS00467. RIBOSOMAL_L2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2QNF3-1 [UniParc]FASTAAdd to Basket

« Hide

MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDIIH    50
DPGRGAPLAK VTFRHPFRYK HQKELFVAAE GMYTGQFVYC GRRATLSIGN 100
VLPIRSVPEG AVVCNVEHHV GDRGVFARAS GDYAIVISHN PDNGTSRIKL 150
PSGAKKIVPS SCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR 200
GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA 250
AATAAKADKA T 261
Length:261
Mass (Da):28,249
Last modified:January 24, 2006 - v1
Checksum:iA065F1E097960AA8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DP000011 Genomic DNA. Translation: ABA99598.1.
AP008218 Genomic DNA. Translation: BAF30081.1.
CM000149 Genomic DNA. Translation: EAZ20909.1.
RefSeqiNP_001067062.1. NM_001073594.1.
UniGeneiOs.11297.

Genome annotation databases

EnsemblPlantsiOS12T0567700-01; OS12T0567700-01; OS12G0567700.
GeneIDi4352560.
KEGGiosa:4352560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DP000011 Genomic DNA. Translation: ABA99598.1 .
AP008218 Genomic DNA. Translation: BAF30081.1 .
CM000149 Genomic DNA. Translation: EAZ20909.1 .
RefSeqi NP_001067062.1. NM_001073594.1.
UniGenei Os.11297.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3J61 electron microscopy 5.50 A 1-261 [» ]
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS12T0567700-01 ; OS12T0567700-01 ; OS12G0567700 .
GeneIDi 4352560.
KEGGi osa:4352560.

Phylogenomic databases

eggNOGi COG0090.
KOi K02938.
OMAi HAIFKSH.

Enzyme and pathway databases

Reactomei REACT_208864. SRP-dependent cotranslational protein targeting to membrane.
REACT_209617. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_216478. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Family and domain databases

Gene3Di 2.30.30.30. 1 hit.
2.40.50.140. 1 hit.
4.10.950.10. 1 hit.
HAMAPi MF_01320_A. Ribosomal_L2_A.
InterProi IPR012340. NA-bd_OB-fold.
IPR022666. Rbsml_prot_L2_RNA-bd_dom.
IPR014722. Rib_L2_dom2.
IPR002171. Ribosomal_L2.
IPR023672. Ribosomal_L2_arc.
IPR022669. Ribosomal_L2_C.
IPR022671. Ribosomal_L2_CS.
IPR014726. Ribosomal_L2_dom3.
IPR008991. Translation_prot_SH3-like.
[Graphical view ]
PANTHERi PTHR13691. PTHR13691. 1 hit.
Pfami PF00181. Ribosomal_L2. 1 hit.
PF03947. Ribosomal_L2_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF002158. Ribosomal_L2. 1 hit.
SUPFAMi SSF50104. SSF50104. 1 hit.
SSF50249. SSF50249. 1 hit.
PROSITEi PS00467. RIBOSOMAL_L2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications."
    The rice chromosomes 11 and 12 sequencing consortia
    BMC Biol. 3:20-20(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The map-based sequence of the rice genome."
    International Rice Genome Sequencing Project
    Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.
    , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T.
    Nature 436:793-800(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 12."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. "The Second Rice Annotation Project Meeting (RAP2)."
    The Rice Annotation Project (RAP)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. Buell C.R., Wing R.A., McCombie W.A., Ouyang S.
    Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  8. "The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information."
    Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T.
    Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  9. Buell R.
    Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. "Improved gene annotation of the rice (Oryza sativa) genomes."
    Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  11. "Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana."
    The Rice Annotation Project (RAP)
    Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E.
    , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.
    Genome Res. 17:175-183(2007)
    Cited for: NUCLEOTIDE SEQUENCE.
  12. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  13. "The Rice Annotation Project Database (RAP-DB): 2008 update."
    The Rice Annotation Project (RAP)
    Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H.
    , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M.
    Nucleic Acids Res. 36:D1028-D1033(2008)
    Cited for: NUCLEOTIDE SEQUENCE.
  14. Cited for: NUCLEOTIDE SEQUENCE.
  15. "Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion."
    Gogala M., Becker T., Beatrix B., Armache J.P., Barrio-Garcia C., Berninghausen O., Beckmann R.
    Nature 506:107-110(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.50 ANGSTROMS).

Entry informationi

Entry nameiQ2QNF3_ORYSJ
AccessioniPrimary (citable) accession number: Q2QNF3
Entry historyi
Integrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: September 3, 2014
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteome

External Data

Dasty 3

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