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Protein
Submitted name:

Tumor necrosis factor (Ligand) superfamily member 13 transcript variant delta

Gene

TNFSF13

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionCytokineSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Tumor necrosis factor (Ligand) superfamily member 13 transcript variant deltaImported
Submitted name:
Tumor necrosis factor ligand superfamily member 13Imported
Gene namesi
Name:TNFSF13Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 17

Organism-specific databases

EuPathDBiHostDB:ENSG00000161955.16
HGNCiHGNC:11928 TNFSF13

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei29 – 50HelicalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000161955

PTM / Processingi

Proteomic databases

PeptideAtlasiQ2QBA2
PRIDEiQ2QBA2

Expressioni

Gene expression databases

BgeeiENSG00000161955
ExpressionAtlasiQ2QBA2 baseline and differential

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

SMRiQ2QBA2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini90 – 223TNF_2InterPro annotationAdd BLAST134

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili48 – 68Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the tumor necrosis factor family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410II60 Eukaryota
ENOG410Y4KC LUCA
GeneTreeiENSGT00530000063837
HOGENOMiHOG000036810
HOVERGENiHBG104367

Family and domain databases

Gene3Di2.60.120.40, 1 hit
InterProiView protein in InterPro
IPR021184 TNF_CS
IPR006052 TNF_dom
IPR008983 Tumour_necrosis_fac-like_dom
PfamiView protein in Pfam
PF00229 TNF, 1 hit
SMARTiView protein in SMART
SM00207 TNF, 1 hit
SUPFAMiSSF49842 SSF49842, 1 hit
PROSITEiView protein in PROSITE
PS00251 TNF_1, 1 hit
PS50049 TNF_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q2QBA2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPASSPFLLA PKGPPGNMGG PVREPALSVA LWLSWGAALG AVACAMALLT
60 70 80 90 100
QQTELQSLRR EVSRLQGTGG PSQNGEGYPW QSLPEQQHSV LHLVPINATS
110 120 130 140 150
KDDSDVTEVM WQPALRRGRG LQAQGYGVRI QDAGVYLLYS QVLFQDVTFT
160 170 180 190 200
MGQVVSREGQ GRQETLFRCI RSMPSHPDRA YNSCYSAGVF HLHQGDILSV
210 220
IIPRARAKLN LSPHGTFLGF VKL
Length:223
Mass (Da):24,279
Last modified:January 24, 2006 - v1
Checksum:i341F54179B86F2C4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC016876 Genomic DNA No translation available.
DQ149579 mRNA Translation: ABA39072.1
RefSeqiNP_001185551.1, NM_001198622.1
UniGeneiHs.54673

Genome annotation databases

EnsembliENST00000380535; ENSP00000369908; ENSG00000161955
GeneIDi8741
UCSCiuc010cmk.2 human

Similar proteinsi

Entry informationi

Entry nameiQ2QBA2_HUMAN
AccessioniPrimary (citable) accession number: Q2QBA2
Entry historyiIntegrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: May 23, 2018
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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