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Q2PK05

- Q2PK05_PETMA

UniProt

Q2PK05 - Q2PK05_PETMA

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Protein
Submitted name: Retinoid X receptor 3
Gene
N/A
Organism
Petromyzon marinus (Sea lamprey)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. steroid hormone receptor activity Source: InterPro
  4. zinc ion binding Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

ReceptorUniRule annotationImported

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotations

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotations, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Retinoid X receptor 3Imported
OrganismiPetromyzon marinus (Sea lamprey)Imported
Taxonomic identifieri7757 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataCyclostomataHyperoartiaPetromyzontiformesPetromyzontidaePetromyzon

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliQ2PK05.
SMRiQ2PK05. Positions 126-205, 221-460.

Family & Domainsi

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotation
Contains nuclear receptor DNA-binding domain.SAAS annotations

Keywords - Domaini

Zinc-fingerUniRule annotationSAAS annotations

Phylogenomic databases

HOVERGENiHBG005606.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiIPR021780. Nuc_recep-AF1.
IPR008946. Nucl_hormone_rcpt_ligand-bd.
IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
IPR000003. Retinoid-X_rcpt/HNF4.
IPR001723. Str_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00104. Hormone_recep. 1 hit.
PF11825. Nuc_recep-AF1. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSiPR00545. RETINOIDXR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2PK05-1 [UniParc]FASTAAdd to Basket

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MNGPPVLSRH HMMGAGPQHH GLHHELPHHG ISSSSSPMGG GDLSPPALNG    50
MCSPYPVISS STVGHNLHTP PSSQHGVSYM GGPQMNSSLN MGSVSSSEDV 100
KPPLGLHGNI RLGSPLPFPN PLCLPKHICA ICGDRSSGKH YGVYSCEGCK 150
GFFKRTVRKD LTYTCRDTKG CIVDKRQRNR CQYCRYQKCL NTGMKREAVQ 200
EERQRGRERE DCDSESGVPL EDMPVEKILE AELAVEPKTE GGCEPGGGGG 250
GGRSRTASPG TSPNDPVTSI CQAADKQLFT LVEWSKRVPH FSELPLDDQV 300
ILLRAGWNEL LIASFSHRSI GVSDGILLAT GLHVHRSSAH SAGVGSIFDR 350
VLTELVSKMR DMNMDKAELG CLRATVLFNP DAKGLSSPCD VEALREKVYA 400
SLESYCKQKY PDQPGRFAKL LLRLPALRSI GLKCLEHLFF FKLISDTPID 450
TFLMEMLEAP LL 462
Length:462
Mass (Da):50,337
Last modified:January 24, 2006 - v1
Checksum:iC9E2DF5490D94337
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ320321 mRNA. Translation: ABC49726.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ320321 mRNA. Translation: ABC49726.1 .

3D structure databases

ProteinModelPortali Q2PK05.
SMRi Q2PK05. Positions 126-205, 221-460.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Phylogenomic databases

HOVERGENi HBG005606.

Family and domain databases

Gene3Di 1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProi IPR021780. Nuc_recep-AF1.
IPR008946. Nucl_hormone_rcpt_ligand-bd.
IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
IPR000003. Retinoid-X_rcpt/HNF4.
IPR001723. Str_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view ]
Pfami PF00104. Hormone_recep. 1 hit.
PF11825. Nuc_recep-AF1. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view ]
PRINTSi PR00545. RETINOIDXR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTi SM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view ]
SUPFAMi SSF48508. SSF48508. 1 hit.
PROSITEi PS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Isolation of Retinoid X Receptors from the Sea Lamprey (Petromyzon marinus)."
    Manzon L.A., Youson J.H.
    Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ2PK05_PETMA
AccessioniPrimary (citable) accession number: Q2PK05
Entry historyi
Integrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: May 14, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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