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Q2PK05 (Q2PK05_PETMA) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
OrganismPetromyzon marinus (Sea lamprey) EMBL ABC49726.1
Taxonomic identifier7757 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataHyperoartiaPetromyzontiformesPetromyzontidaePetromyzon

Protein attributes

Sequence length462 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the nuclear hormone receptor family. RuleBase RU000377

Contains nuclear receptor DNA-binding domain. SAAS SAAS008946

Sequences

Sequence LengthMass (Da)Tools
Q2PK05 [UniParc].

Last modified January 24, 2006. Version 1.
Checksum: C9E2DF5490D94337

FASTA46250,337
        10         20         30         40         50         60 
MNGPPVLSRH HMMGAGPQHH GLHHELPHHG ISSSSSPMGG GDLSPPALNG MCSPYPVISS 

        70         80         90        100        110        120 
STVGHNLHTP PSSQHGVSYM GGPQMNSSLN MGSVSSSEDV KPPLGLHGNI RLGSPLPFPN 

       130        140        150        160        170        180 
PLCLPKHICA ICGDRSSGKH YGVYSCEGCK GFFKRTVRKD LTYTCRDTKG CIVDKRQRNR 

       190        200        210        220        230        240 
CQYCRYQKCL NTGMKREAVQ EERQRGRERE DCDSESGVPL EDMPVEKILE AELAVEPKTE 

       250        260        270        280        290        300 
GGCEPGGGGG GGRSRTASPG TSPNDPVTSI CQAADKQLFT LVEWSKRVPH FSELPLDDQV 

       310        320        330        340        350        360 
ILLRAGWNEL LIASFSHRSI GVSDGILLAT GLHVHRSSAH SAGVGSIFDR VLTELVSKMR 

       370        380        390        400        410        420 
DMNMDKAELG CLRATVLFNP DAKGLSSPCD VEALREKVYA SLESYCKQKY PDQPGRFAKL 

       430        440        450        460 
LLRLPALRSI GLKCLEHLFF FKLISDTPID TFLMEMLEAP LL 

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References

[1]"Isolation of Retinoid X Receptors from the Sea Lamprey (Petromyzon marinus)."
Manzon L.A., Youson J.H.
Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DQ320321 mRNA. Translation: ABC49726.1.

3D structure databases

ProteinModelPortalQ2PK05.
SMRQ2PK05. Positions 126-205, 221-460.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

HOVERGENHBG005606.

Family and domain databases

Gene3D1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProIPR021780. Nuc_recep-AF1.
IPR008946. Nucl_hormone_rcpt_ligand-bd.
IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
IPR000003. Retinoid-X_rcpt/HNF4.
IPR001723. Str_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamPF00104. Hormone_recep. 1 hit.
PF11825. Nuc_recep-AF1. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSPR00545. RETINOIDXR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMSSF48508. SSF48508. 1 hit.
PROSITEPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2PK05_PETMA
AccessionPrimary (citable) accession number: Q2PK05
Entry history
Integrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: February 19, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)