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Protein
Submitted name:

Platelet aggregation factor Sm-hPAF

Gene

samhpaf

Organism
Streptococcus mitis
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi68Calcium; via carbonyl oxygenCombined sources1
Metal bindingi71CalciumCombined sources1
Metal bindingi73Calcium; via carbonyl oxygenCombined sources1
Metal bindingi82CalciumCombined sources1
Binding sitei85FucoseCombined sources1
Binding sitei112FucoseCombined sources1
Binding sitei120FucoseCombined sources1
Metal bindingi176Calcium; via carbonyl oxygenCombined sources1
Metal bindingi177CalciumCombined sources1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

CalciumCombined sources, Metal-bindingCombined sources

Protein family/group databases

CAZyiCBM47. Carbohydrate-Binding Module Family 47.

Names & Taxonomyi

Protein namesi
Submitted name:
Platelet aggregation factor Sm-hPAFImported
Gene namesi
Name:samhpafImported
OrganismiStreptococcus mitisImported
Taxonomic identifieri28037 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeStreptococcus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 36Sequence analysisAdd BLAST36
ChainiPRO_500421343737 – 665Sequence analysisAdd BLAST629

Interactioni

Protein-protein interaction databases

STRINGi585204.SMSK597_0147.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3LE0X-ray1.91A38-190[»]
3LEGX-ray2.01A38-190[»]
3LEIX-ray1.90A38-190[»]
3LEKX-ray2.00A38-190[»]
4GWIX-ray1.60A38-190[»]
4GWJX-ray1.60A38-190[»]
ProteinModelPortaliQ2PHL4.
SMRiQ2PHL4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ2PHL4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini30 – 183F5/8 type CInterPro annotationAdd BLAST154

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105E5P. Bacteria.
ENOG410XQPX. LUCA.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
3.90.840.10. 4 hits.
InterProiIPR000421. FA58C.
IPR006585. FTP1.
IPR008979. Galactose-bd-like.
IPR001869. Thiol_cytolysin.
[Graphical view]
PfamiPF00754. F5_F8_type_C. 1 hit.
PF01289. Thiol_cytolysin. 1 hit.
[Graphical view]
PRINTSiPR01400. TACYTOLYSIN.
SMARTiSM00607. FTP. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF56978. SSF56978. 1 hit.
PROSITEiPS50022. FA58C_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2PHL4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNQEKRLHRF VKKCGLGVCS AVVAAFLLNA QGVALATEQG NRPVETENIA
60 70 80 90 100
RGKQASQSST AYGGAAARAV DGNVDSDYGH HSVTHTNFED NAWWQVDLGK
110 120 130 140 150
TENVGKVKLY NRGDGNVANR LSNFDVVLLN EAKQEVARQH FDSLNGKAEL
160 170 180 190 200
EVFFTAKAAR YVKVELKTKN TPLSLAEVEV FRSATTQVGQ DRTAPVVDQT
210 220 230 240 250
SALKDYLFGL AYNPLDILTR KGETLENRYN TSAKEQNGEF VVVEKIKKTL
260 270 280 290 300
STGTADVSIN GNQNVFLGGL YKANQNLLEN QPELISLARA KGTVSVDLPG
310 320 330 340 350
MIQSDSRIEA DPTTSGMQSA MNTLVERWTK NYSSSHSVPA RVQYESTTAY
360 370 380 390 400
SMNQLKAKFG ADFEKAGAPL KIDFEAVQKG EKQIEVVNFK QIYYTATFDA
410 420 430 440 450
PTNPAAVFDK SVTPEDLKQR GVDSQTPPVY VSNVSYGRQI YVKFESASKS
460 470 480 490 500
TELKAAINAV IKGATIAPNS EWSRLLKNTS VTAVIVGGNA SGAAKVVTGT
510 520 530 540 550
VENLKELIRE GANFSAQSPA VPISYKTAFL KDNAQATLQN STDYIETKVT
560 570 580 590 600
SYKNGFLKLH HKGAYVARYY IYWDEITYDE QGNPEIRSRQ WEDNGKNRTS
610 620 630 640 650
GFQTEIQFRG NVRNLRIKVQ EKTGLVWEPW RTVYNRTDLP LVQQRTITHW
660
GTTLNPKVDE KIVNE
Length:665
Mass (Da):73,598
Last modified:February 7, 2006 - v1
Checksum:iC5ED3F30AA91BA96
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB051299 Genomic DNA. Translation: BAE72438.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB051299 Genomic DNA. Translation: BAE72438.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3LE0X-ray1.91A38-190[»]
3LEGX-ray2.01A38-190[»]
3LEIX-ray1.90A38-190[»]
3LEKX-ray2.00A38-190[»]
4GWIX-ray1.60A38-190[»]
4GWJX-ray1.60A38-190[»]
ProteinModelPortaliQ2PHL4.
SMRiQ2PHL4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi585204.SMSK597_0147.

Protein family/group databases

CAZyiCBM47. Carbohydrate-Binding Module Family 47.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4105E5P. Bacteria.
ENOG410XQPX. LUCA.

Miscellaneous databases

EvolutionaryTraceiQ2PHL4.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
3.90.840.10. 4 hits.
InterProiIPR000421. FA58C.
IPR006585. FTP1.
IPR008979. Galactose-bd-like.
IPR001869. Thiol_cytolysin.
[Graphical view]
PfamiPF00754. F5_F8_type_C. 1 hit.
PF01289. Thiol_cytolysin. 1 hit.
[Graphical view]
PRINTSiPR01400. TACYTOLYSIN.
SMARTiSM00607. FTP. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF56978. SSF56978. 1 hit.
PROSITEiPS50022. FA58C_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ2PHL4_STRMT
AccessioniPrimary (citable) accession number: Q2PHL4
Entry historyi
Integrated into UniProtKB/TrEMBL: February 7, 2006
Last sequence update: February 7, 2006
Last modified: November 2, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.