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Q2PC93

- SSPO_CHICK

UniProt

Q2PC93 - SSPO_CHICK

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Protein
SCO-spondin
Gene
SSPO
Organism
Gallus gallus (Chicken)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

Involved in the modulation of neuronal aggregation. May be involved in developmental events during the formation of the central nervous system By similarity.

GO - Biological processi

  1. cell adhesion Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Cell adhesion

Keywords - Ligandi

Calcium

Names & Taxonomyi

Protein namesi
Recommended name:
SCO-spondin
Gene namesi
Name:SSPO
OrganismiGallus gallus (Chicken)
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiTestudines + Archosauria groupArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalliformesPhasianidaePhasianinaeGallus
ProteomesiUP000000539: Unplaced

Subcellular locationi

Secretedextracellular space By similarity

GO - Cellular componenti

  1. extracellular space Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1818 Reviewed prediction
Add
BLAST
Chaini19 – 52555237SCO-spondin
PRO_0000245045Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi? ↔ 5247 By similarity
Glycosylationi97 – 971N-linked (GlcNAc...) Reviewed prediction
Glycosylationi136 – 1361N-linked (GlcNAc...) Reviewed prediction
Glycosylationi156 – 1561N-linked (GlcNAc...) Reviewed prediction
Glycosylationi255 – 2551N-linked (GlcNAc...) Reviewed prediction
Glycosylationi801 – 8011N-linked (GlcNAc...) Reviewed prediction
Glycosylationi931 – 9311N-linked (GlcNAc...) Reviewed prediction
Glycosylationi972 – 9721N-linked (GlcNAc...) Reviewed prediction
Glycosylationi1340 – 13401N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi1363 ↔ 1376 By similarity
Disulfide bondi1370 ↔ 1389 By similarity
Disulfide bondi1383 ↔ 1397 By similarity
Disulfide bondi1401 ↔ 1413 By similarity
Disulfide bondi1408 ↔ 1426 By similarity
Disulfide bondi1420 ↔ 1435 By similarity
Disulfide bondi1440 ↔ 1452 By similarity
Disulfide bondi1447 ↔ 1465 By similarity
Disulfide bondi1459 ↔ 1476 By similarity
Disulfide bondi1480 ↔ 1492 By similarity
Disulfide bondi1487 ↔ 1505 By similarity
Disulfide bondi1499 ↔ 1514 By similarity
Disulfide bondi1516 ↔ 1528 By similarity
Disulfide bondi1523 ↔ 1541 By similarity
Disulfide bondi1535 ↔ 1550 By similarity
Disulfide bondi1556 ↔ 1568 By similarity
Disulfide bondi1563 ↔ 1581 By similarity
Disulfide bondi1575 ↔ 1592 By similarity
Glycosylationi1610 – 16101N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi1617 ↔ 1629 By similarity
Disulfide bondi1624 ↔ 1642 By similarity
Disulfide bondi1636 ↔ 1651 By similarity
Glycosylationi1652 – 16521N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi1655 ↔ 1668 By similarity
Disulfide bondi1662 ↔ 1681 By similarity
Disulfide bondi1675 ↔ 1692 By similarity
Disulfide bondi1700 ↔ 1711 By similarity
Disulfide bondi1706 ↔ 1724 By similarity
Glycosylationi1713 – 17131N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi1718 ↔ 1733 By similarity
Glycosylationi1743 – 17431N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi1749 ↔ 1759 By similarity
Disulfide bondi1754 ↔ 1772 By similarity
Disulfide bondi1766 ↔ 1789 By similarity
Disulfide bondi1801 ↔ 1837 By similarity
Disulfide bondi1805 ↔ 1842 By similarity
Disulfide bondi1816 ↔ 1827 By similarity
Glycosylationi1856 – 18561N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi1857 ↔ 1897 By similarity
Disulfide bondi1861 ↔ 1902 By similarity
Disulfide bondi1871 ↔ 1881 By similarity
Disulfide bondi2003 ↔ 2042 By similarity
Disulfide bondi2014 ↔ 2018 By similarity
Disulfide bondi2052 ↔ 2057 By similarity
Glycosylationi2125 – 21251N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi2162 ↔ 2310 By similarity
Glycosylationi2230 – 22301N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi2328 ↔ 2339 By similarity
Disulfide bondi2335 ↔ 2352 By similarity
Disulfide bondi2346 ↔ 2361 By similarity
Disulfide bondi2482 ↔ 2494 By similarity
Disulfide bondi2489 ↔ 2507 By similarity
Disulfide bondi2501 ↔ 2516 By similarity
Disulfide bondi2539 ↔ 2551 By similarity
Disulfide bondi2546 ↔ 2564 By similarity
Disulfide bondi2558 ↔ 2573 By similarity
Disulfide bondi2576 ↔ 2612 By similarity
Disulfide bondi2587 ↔ 2591 By similarity
Disulfide bondi2622 ↔ 2627 By similarity
Disulfide bondi2642 ↔ 2679 By similarity
Disulfide bondi2646 ↔ 2684 By similarity
Disulfide bondi2657 ↔ 2669 By similarity
Glycosylationi2746 – 27461N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi2791 ↔ 2829 By similarity
Disulfide bondi2802 ↔ 2806 By similarity
Disulfide bondi2839 ↔ 2843 By similarity
Disulfide bondi2861 ↔ 2897 By similarity
Disulfide bondi2865 ↔ 2902 By similarity
Disulfide bondi2881 ↔ 2887 By similarity
Disulfide bondi2917 ↔ 2952 By similarity
Disulfide bondi2921 ↔ 2957 By similarity
Disulfide bondi2932 ↔ 2942 By similarity
Glycosylationi3011 – 30111N-linked (GlcNAc...) Reviewed prediction
Glycosylationi3042 – 30421N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi3061 ↔ 3099 By similarity
Glycosylationi3065 – 30651N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi3072 ↔ 3076 By similarity
Disulfide bondi3109 ↔ 3114 By similarity
Glycosylationi3136 – 31361N-linked (GlcNAc...) Reviewed prediction
Glycosylationi3238 – 32381N-linked (GlcNAc...) Reviewed prediction
Glycosylationi3248 – 32481N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi3270 ↔ 3303 By similarity
Disulfide bondi3274 ↔ 3308 By similarity
Disulfide bondi3285 ↔ 3293 By similarity
Glycosylationi3350 – 33501N-linked (GlcNAc...) Reviewed prediction
Glycosylationi3366 – 33661N-linked (GlcNAc...) Reviewed prediction
Glycosylationi3392 – 33921N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi3422 ↔ 3468 By similarity
Disulfide bondi3426 ↔ 3474 By similarity
Disulfide bondi3437 ↔ 3449 By similarity
Disulfide bondi3489 ↔ 3524 By similarity
Disulfide bondi3492 ↔ 3531 By similarity
Disulfide bondi3502 ↔ 3514 By similarity
Glycosylationi3598 – 35981N-linked (GlcNAc...) Reviewed prediction
Glycosylationi3625 – 36251N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi3656 ↔ 3693 By similarity
Disulfide bondi3660 ↔ 3699 By similarity
Disulfide bondi3671 ↔ 3683 By similarity
Disulfide bondi3714 ↔ 3745 By similarity
Disulfide bondi3718 ↔ 3750 By similarity
Disulfide bondi3729 ↔ 3735 By similarity
Glycosylationi3823 – 38231N-linked (GlcNAc...) Reviewed prediction
Glycosylationi3869 – 38691N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi3890 ↔ 3928 By similarity
Disulfide bondi3894 ↔ 3933 By similarity
Disulfide bondi3906 ↔ 3918 By similarity
Disulfide bondi3963 ↔ 3998 By similarity
Disulfide bondi3967 ↔ 4003 By similarity
Disulfide bondi3982 ↔ 3988 By similarity
Glycosylationi4018 – 40181N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi4019 ↔ 4055 By similarity
Disulfide bondi4030 ↔ 4034 By similarity
Disulfide bondi4068 ↔ 4073 By similarity
Disulfide bondi4088 ↔ 4125 By similarity
Disulfide bondi4092 ↔ 4130 By similarity
Disulfide bondi4103 ↔ 4115 By similarity
Glycosylationi4174 – 41741N-linked (GlcNAc...) Reviewed prediction
Glycosylationi4211 – 42111N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi4231 ↔ 4266 By similarity
Disulfide bondi4242 ↔ 4246 By similarity
Disulfide bondi4276 ↔ 4281 By similarity
Glycosylationi4362 – 43621N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi4387 ↔ 4417 By similarity
Disulfide bondi4398 ↔ 4400 By similarity
Disulfide bondi4427 ↔ 4432 By similarity
Glycosylationi4428 – 44281N-linked (GlcNAc...) Reviewed prediction
Glycosylationi4498 – 44981N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi4548 ↔ 4601 By similarity
Disulfide bondi4551 ↔ 4607 By similarity
Disulfide bondi4575 ↔ 4591 By similarity
Disulfide bondi4611 ↔ 4646 By similarity
Disulfide bondi4622 ↔ 4626 By similarity
Disulfide bondi4656 ↔ 4661 By similarity
Glycosylationi4730 – 47301N-linked (GlcNAc...) Reviewed prediction
Glycosylationi4747 – 47471N-linked (GlcNAc...) Reviewed prediction
Glycosylationi4752 – 47521N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi4774 ↔ 4809 By similarity
Disulfide bondi4778 ↔ 4814 By similarity
Disulfide bondi4789 ↔ 4798 By similarity
Disulfide bondi4818 ↔ 4852 By similarity
Disulfide bondi4829 ↔ 4833 By similarity
Disulfide bondi4863 ↔ 4868 By similarity
Glycosylationi4867 – 48671N-linked (GlcNAc...) Reviewed prediction
Glycosylationi4939 – 49391N-linked (GlcNAc...) Reviewed prediction
Glycosylationi4970 – 49701N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi4980 ↔ 5017 By similarity
Disulfide bondi4991 ↔ 4995 By similarity
Disulfide bondi5027 ↔ 5032 By similarity
Glycosylationi5081 – 50811N-linked (GlcNAc...) Reviewed prediction
Glycosylationi5122 – 51221N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi5161 ↔ 5209 By similarity
Glycosylationi5169 – 51691N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi5175 ↔ 5226 By similarity
Disulfide bondi5185 ↔ 5242 By similarity
Disulfide bondi5189 ↔ 5244 By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ2PC93.

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000038585.

Structurei

3D structure databases

ProteinModelPortaliQ2PC93.
SMRiQ2PC93. Positions 3059-3085.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 11193EMI
Add
BLAST
Domaini193 – 395203VWFD 1
Add
BLAST
Domaini453 – 50856TIL 1
Add
BLAST
Domaini508 – 60194VWFC 1
Add
BLAST
Domaini547 – 755209VWFD 2
Add
BLAST
Domaini809 – 86860TIL 2
Add
BLAST
Domaini868 – 92659VWFC 2
Add
BLAST
Domaini999 – 1207209VWFD 3
Add
BLAST
Domaini1263 – 131957TIL 3
Add
BLAST
Domaini1362 – 139837LDL-receptor class A 1
Add
BLAST
Domaini1400 – 143637LDL-receptor class A 2
Add
BLAST
Domaini1439 – 147739LDL-receptor class A 3
Add
BLAST
Domaini1479 – 151537LDL-receptor class A 4
Add
BLAST
Domaini1515 – 155137LDL-receptor class A 5
Add
BLAST
Domaini1555 – 159339LDL-receptor class A 6
Add
BLAST
Domaini1616 – 165237LDL-receptor class A 7
Add
BLAST
Domaini1654 – 169340LDL-receptor class A 8
Add
BLAST
Domaini1699 – 173436LDL-receptor class A 9
Add
BLAST
Domaini1748 – 179043LDL-receptor class A 10
Add
BLAST
Domaini1789 – 184355TSP type-1 1
Add
BLAST
Domaini1845 – 190359TSP type-1 2
Add
BLAST
Domaini1907 – 196155TIL 4
Add
BLAST
Domaini1919 – 195638EGF-like 1
Add
BLAST
Domaini1957 – 198327EGF-like 2
Add
BLAST
Domaini1961 – 201959VWFC 3
Add
BLAST
Domaini2002 – 205857TSP type-1 3
Add
BLAST
Domaini2058 – 212063VWFC 4
Add
BLAST
Domaini2162 – 2310149F5/8 type C
Add
BLAST
Domaini2327 – 236236LDL-receptor class A 11
Add
BLAST
Domaini2481 – 251737LDL-receptor class A 12
Add
BLAST
Domaini2538 – 257437LDL-receptor class A 13
Add
BLAST
Domaini2575 – 262854TSP type-1 4
Add
BLAST
Domaini2630 – 268556TSP type-1 5
Add
BLAST
Domaini2708 – 275043TIL 5
Add
BLAST
Domaini2790 – 284455TSP type-1 6
Add
BLAST
Domaini2849 – 290355TSP type-1 7
Add
BLAST
Domaini2905 – 295854TSP type-1 8
Add
BLAST
Domaini3020 – 307758VWFC 5
Add
BLAST
Domaini3060 – 311556TSP type-1 9
Add
BLAST
Domaini3117 – 315842TSP type-1 10
Add
BLAST
Domaini3165 – 321753TIL 6
Add
BLAST
Domaini3217 – 327559VWFC 6
Add
BLAST
Domaini3258 – 330952TSP type-1 11
Add
BLAST
Domaini3410 – 347566TSP type-1 12
Add
BLAST
Domaini3477 – 353256TSP type-1 13
Add
BLAST
Domaini3644 – 370057TSP type-1 14
Add
BLAST
Domaini3702 – 375150TSP type-1 15
Add
BLAST
Domaini3878 – 393457TSP type-1 16
Add
BLAST
Domaini3951 – 400454TSP type-1 17
Add
BLAST
Domaini4018 – 407457TSP type-1 18
Add
BLAST
Domaini4076 – 413156TSP type-1 19
Add
BLAST
Domaini4230 – 428253TSP type-1 20
Add
BLAST
Domaini4322 – 438463TSP type-1 21
Add
BLAST
Domaini4386 – 443348TSP type-1 22
Add
BLAST
Domaini4537 – 460872TSP type-1 23
Add
BLAST
Domaini4610 – 466253TSP type-1 24
Add
BLAST
Domaini4762 – 481554TSP type-1 25
Add
BLAST
Domaini4817 – 486953TSP type-1 26
Add
BLAST
Domaini4872 – 492655TIL 7
Add
BLAST
Domaini4979 – 503355TSP type-1 27
Add
BLAST
Domaini5092 – 515059VWFC 7
Add
BLAST
Domaini5161 – 524888CTCK
Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi737 – 7426Poly-Ala

Sequence similaritiesi

Belongs to the thrombospondin family.
Contains 2 EGF-like domains.
Contains 1 EMI domain.
Contains 1 F5/8 type C domain.
Contains 27 TSP type-1 domains.
Contains 7 VWFC domains.
Contains 3 VWFD domains.

Keywords - Domaini

EGF-like domain, Repeat, Signal

Phylogenomic databases

eggNOGiNOG12793.
HOVERGENiHBG080794.
PhylomeDBiQ2PC93.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
4.10.400.10. 13 hits.
InterProiIPR000421. Coagulation_fac_5/8-C_type_dom.
IPR006207. Cys_knot_C.
IPR008979. Galactose-bd-like.
IPR023415. LDLR_class-A_CS.
IPR002172. LDrepeatLR_classA_rpt.
IPR000884. Thrombospondin_1_rpt.
IPR002919. TIL_dom.
IPR014853. Unchr_dom_Cys-rich.
IPR001007. VWF_C.
IPR001846. VWF_type-D.
[Graphical view]
PfamiPF08742. C8. 3 hits.
PF00754. F5_F8_type_C. 1 hit.
PF00057. Ldl_recept_a. 11 hits.
PF01826. TIL. 13 hits.
PF00090. TSP_1. 25 hits.
PF00093. VWC. 1 hit.
PF00094. VWD. 3 hits.
[Graphical view]
PRINTSiPR00261. LDLRECEPTOR.
SMARTiSM00832. C8. 3 hits.
SM00231. FA58C. 1 hit.
SM00192. LDLa. 13 hits.
SM00209. TSP1. 27 hits.
SM00214. VWC. 5 hits.
SM00216. VWD. 3 hits.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF57424. SSF57424. 12 hits.
SSF57567. SSF57567. 15 hits.
SSF82895. SSF82895. 25 hits.
PROSITEiPS01225. CTCK_2. 1 hit.
PS01285. FA58C_1. 1 hit.
PS01286. FA58C_2. 1 hit.
PS50022. FA58C_3. 1 hit.
PS01209. LDLRA_1. 11 hits.
PS50068. LDLRA_2. 13 hits.
PS50092. TSP1. 27 hits.
PS01208. VWFC_1. 1 hit.
PS50184. VWFC_2. 2 hits.
PS51233. VWFD. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q2PC93-1 [UniParc]FASTAAdd to Basket

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MGIVATVLLW VVTEAARGRW CERTEQVTEE EVVMPRREDV VPCPSMYQYS     50
LAGWRIDLNR MRQVYGGERG VPPTSTHPGA AMCYIYRPPE TQLVVRNRTV 100
RACCAGWSGP HCTEVEGSLG QCHASWQCQD ALGAHNLSTV SMAECCRQPW 150
GHSWRNGSSA LCFACSRQPL TGDVPLPTAP RGPAARHRGP TASCTVWAGS 200
RYRSFDGRHF GFQGECAYSL AASTDSTWAV SITPGSPPVL HMTFGLDTVV 250
AQGHNISVNG VAVPEGRQHL HGGISVTWLG DFVAVESGLG VHLKLDGRGT 300
VYVTVSAELR GSTKGLCGPY NDDPIDDFLR VEGDVAPLAA SFGNSWRIPD 350
ANPELSCSDA VEPSPGCAMG STAQRAAEAM CGMLLTDPFR QCHEAVDPHG 400
FYEACLELHC REGGTGPSPP PAVCDTLATY VRDCAQRRAY IEWRRPGLCE 450
QQCGHGQRYS DCVSSCPASC MAAGTAEEGH CRDDCASGCE CTPGLLLDRG 500
ACIPQSACPC LHRGHIYAPG QSIRQRCNQC TCRGGRWLCT QDRCAAECAV 550
LGDLHYITFD RRRFSFPGAC EYTLVQDFVE GTLRITAEQE ACGGHQPLSC 600
LRALSITVPG ASARLHSTGE VVVDGRVVPL PFASAALTVR RASSSFLLLQ 650
TFGAHLLWGL ETPAAYITLQ PAFANKVRGL CGTYNWDQRD DFATPAGDVE 700
VGVTAFANKY RVSTDCPVLS PVPFEPCSTY APRRELAAAA CAILHGASFQ 750
PCHHLVDREP FHQLCLYDVC ACPAGKHCLC PALAAYAREC AQEGAALSWR 800
NESFCGTQCR GGQVYQECSS PCGRTCADLR LDGASSCPSL DNICVSGCNC 850
PEGPVLDDGG QCVPPGVCPC QHSSQLYPAG SKIRQGCNAC MCTAGTWSCT 900
DAPCPDAAFC PGDLVYVFGS CLRTCDSAEP NGTCTGIADG CVCPPGTVFL 950
DERCVPPEEC PCQHNGRLYH PNDTIVRDCN TCVCRQQRWQ CSSEDCMGTC 1000
VATGDPHYIT FDGRAFSFLG DCEYVLVREA NGLFTVTAEN VPCGTSGVTC 1050
TKSVVVEMGN TVVHMLRGRD VTVNGVSVRP PKVYSGNGLT LQRAGIFLLL 1100
LSRLGLAVLW DGGTRVYIRL QPQHRGRVVG LCGNFDRDAE NDLASQQGVL 1150
EPTAELFGNS WRVSLLCPEV DGTTAQHPCT DNPHRATWAR KRCSILTQRL 1200
FAPCHDEVPC QHFYDWCIFD ACGCDSGGDC ECLCTAIATY AEECSQRGIH 1250
IRWRSQDLCP MQCDGGQEYS ACGPPCPQTC RNLGLELPEH CDTMSCLEGC 1300
FCPEGKVLHE GSCIDPAECP CFWQGIAFPD SAVVQQGCRN CSCTAGLWQC 1350
VPTAEPCPAQ PHCPDSEFPC RSGGRCVPGA WLCDNEDDCG DGSDEVCALH 1400
CAPHQHRCAD GQCVPWGARC DGLSDCGDGS DERGCPPPPC APPEFRCASG 1450
RCIPRAHVCN GELDCGFADD SDEAGCSPSC SVGEFQCAAG RCVPYPHRCN 1500
GHDDCGDFSD ERGCVCPAGH FQCPDAQCLP PAALCDGMQD CGDGTDEAFC 1550
PDRITCAPGQ LPCPDGSCVS QVKLCDGIWD CRDGWDESSV RCMVSWAPPA 1600
PTQLPTVPAN GTAAPVCGPY EFPCRSGQCV PRGWVCDSEA DCPDNSDELG 1650
CNRSCVLGHF PCALGAHCIH YDHLCDGIPH CPDHSDESDD NCGSTQIPPC 1700
PGHFVCNNRV CVNATRVCDG ALDCPQGEDE LACEGYVPTG ERNQTVGPCA 1750
EYSCRDGDCI TFKQVCNGLP DCRDGDMASG WLPSDEWDCG QWGPWAPWGI 1800
CSHSCGLGQQ LRARECSQRT PGVLHQCHGE ATQARPCFST ACPVDGAWSE 1850
WTMWSNCTQG CEGVVVRQRH CQPPRDGGRP CAALPATAHA TLEIGTCQQD 1900
GCPPASCPGG LQPRPCAPCP ASCADLASRA PCRREQCTPG CWCAEGLVLD 1950
GERGCVRPRE CRCEVDGLRY WPGQRMKLNC RLCTCLDGQP RRCRHNPACS 2000
VSCSWSAWSP WGECLGPCGV QSIQWSFRSP SHPGKHGTNR QCRGIYRKAR 2050
RCQTEPCQEC EHQGRSRAQG DRWRWGPCHV CQCLPGPEVR CSPYCARSAV 2100
GCPQGQVLVE GKGDSCCFCA QIGDNVTAIP TALTMEPPST MPGEPSDSPL 2150
PTFPLPSPGD PCYSPLGIAS LPDSSFTASA EQQQHPARAA RLHHVSPGLE 2200
LQGWAPPADT VPGLPSHLPF LQLDLLQTTN LTGVVVQGAG AGDAFITAFQ 2250
LQFSTDGNRW HNYQQLFQGN WDATTPVVQP LDHMVQARYI RILPQGFHNA 2300
IFLRAELLGC PTVPLDLAVT TAVTPAPCGT GEFWCGVSCV TASRRCDGAT 2350
DCPGGADEAG CEPPSSTTLP THPASLTTPG SAGILGLTAE PPVAPPAAVP 2400
EGTSAWLTVG STSPAVPSTT GLPGVPTATI TPRGPPSAGP PSPGMAAVTV 2450
SHPVMGPPAL PMPPTGVPTP TSAEPPLPRL LCPPDQFLCD ALGCVDAAMV 2500
CDGQQDCLDG SDEAHCGALP TSGSSPSPLA WPSSPPPTCS PKQFSCGTGE 2550
CLALEKRCDL SRDCADGSDE SSCADCILSP WGGWSQCSHS CGLGVTSRQR 2600
VLLRGALPGG TCHTPRLDTR ACFLRACPVP GAWAAWGVWS SCDAECGGGM 2650
RSRTRSCTDP PPKNGGQPCA GEALQSQPCN LQPCGDTREC GPGMVLVQEG 2700
DCVQGLVPPC PQVCGDLSAT SSCQSPCQEG CRCPPGLFLQ EGTCVNASQC 2750
HCHQGQQRWL PSQVFLRDGC SQCVCRDGVV TCEDTACPIA CAWSAWSLWT 2800
LCDRSCGVGM QERFRSPSNP AAANGGAPCD GDTREVRECH TPCATAEPSS 2850
GWSSWTPWSP CSRSCFHHVD QRGRRHRFRH CEGMGTCPGL GVQEEPCDTA 2900
PCPVAGVWMP WSAWSECSAP CDAGVQTRSR TCTPPAFGGA ECTGPHLQTR 2950
NCNTRPCGAQ CPDTMQYLTA EECRHSEGRC PWICQDLGAG VACTAQCQPG 3000
CHCPAGLLLQ NGTCVPPSHC LCHHRGHLYQ PGDINALDTC NNCTCVTGQM 3050
VCSTETCPVP CTWSNWTAWS TCSHSCDVGM RRRYRVPIVP PLAGGGPPCQ 3100
GPSMEVEFCS LQPCRAVAPW GPWSECSVSC GGGYRNRTRD GPPLHSLEFS 3150
TCNPAPCPGK EPGVCPPGKQ WQACAQGAAS CAELSAAPPA DGSCHPGCYC 3200
PPGALLLNNE CVAEAACPCA VDGVLYQPGD VVPQGCHNCS CIAGRVTNCS 3250
QEDCGDVDGP WTPWTPWSEC SASCGPGRQR RYRFCSAHPG VPCAEPQPQE 3300
RPCARQPCHS PDCAAVPGSV FSHCRPPCPR SCDDISHCVW HRQPGCYCTN 3350
GTLLDATGTA CVALENCTCL DAHSGQRHQP GQSVPRGDGC NNCTCTQGRL 3400
LCTGLPCPVP GAWCEWSPWT PCSRSCGDEA ATRHRVCSCP APQQGGAGCP 3450
GGLEGHGDTG MQLQHQECPS VPPCPEDGAW AAWGPWSGCG GCGGQAVRTR 3500
SCSSPPARFG GLPCAGEARQ SRACPWATSS CPECAGGLVA FTCGKPCPHS 3550
CEDLREDTAC MATPRCLPAC ACPHGQLLQD GDCVPPELCR CAWAPSKNGS 3600
IWEQDGAVPM QELQPGETVQ RHCQNCTCKS GTLQCHAEPG CRADGGWSPW 3650
GPWSPCSPGC QAGTQLASRQ CNNPTPQLGG RGCSGHSQRQ RPCPATEGCP 3700
EEEPWGEWSP WGPCSASCGG GEQLRHRDCP PPGGCPGLAL QSKTCNTHVC 3750
REAGCPPGRL YRECQQGEGC PYSCAHLAGR IACFPGGCQE GCHCPTGTLL 3800
HHGHCLQECP CVLTAEVLRK LRNSSADLQA APHLLGTRGP PLALDQELPP 3850
GSTIHSACTS CTCLHGRLNC SEPVCPRDGG FSPWGPWSSC SRSCGGLGVM 3900
TRRRGCTNPE PARGGRDCAG PRSDSKYCQS PECPAVPTTE PGPGVAGAEE 3950
EEGFGPWSPW SPCSKTCTHP ERPATKTRER PCVGTAVCSG DGFQEQPCNL 4000
PLCSDVPPCQ GEDCAGLNCS WAPWGPWTEC SRSCGVGRQQ RLRAYSPPGA 4050
SGRWCPGILS AFVQRRFCSL QACKVDGAWS AWSPWSRCDR TCGGGRAVRT 4100
RSCTRPPPKN GGQRCPGERH QLHLCNAQPC DDSCPPGMAL VTCANHCPRH 4150
CGDLQEGIVC REEEHCEPGC RCPNGTLEQD GGCVPLAHCE CTDAQGHGWV 4200
PGSTHHDGCN NCTCLEGRLR CTDRLCPPLR CPWSRWSRWS PCSVTCGDGQ 4250
QTRFRTPTAG SWDEECQGEQ MENRGCAAGP CPPLCPQGSW ERRLGDMWLQ 4300
GECQRCTCTP EGTVCEDTTC AGAEHCTWGT WSPCSRSCGT GLASREGSCP 4350
CPFPGPPGAV CNASTGDGAR PHREVQACYL RPCPAECSWS AWSSWGGCSC 4400
SSPLQHRYRH RHGTGLCVGL DVELHPCNTS GCSESSCEPP FEFQPCSPPC 4450
ARLCSTLQHP ELCPAQSHCL PGCFCPQGLL EQRSACVPPE QCDCLHTNES 4500
GDLVTLSPGD IILLGCKECV CQDGALQCSS EGCQGLLPLS PWSEWTPCST 4550
CLPLFPSHLG DATPHVSVQH RYRACLDPQS GQPWSGDTAV CSAELQQQRL 4600
CPDPDICQEL CLWSPWGPWG PCQQPCSGSF RLRHRHLQRL AGSGQCQGAQ 4650
TQSESCNTAV CPGEDCEKQG RVFATTCANS CPRACADLWQ HVECVQGGCK 4700
PGCRCPQGQL LQDGLCVPTA QCRCGLSGDN GTQELWPGQE ATIECHNCTC 4750
ENGTMVCPAL PCPSYGPWST WSPCSSSCGS GRTSRHRTCE PNPGGVPCMA 4800
SGMQETAECS PQPCPAGCQL SPWSPWSPCS SSCGGGRSER SRELLGGEEE 4850
PCPIPALRQH RVCNVHNCTQ ECPRSQVHRE CANACPHACA DLRPQTQCLP 4900
QPCQPGCACP PGQVLQDGAC VPPEECRCTL DSTMPGVLNL SREEQEQEHA 4950
PGSRLQHRCN TCICIRGTFN CSQEECNVDC LWSPWSPWSP CSVTCGMGER 5000
LSHRHPLRQR LYEGAECLGP PVRRAACHLP DCACPEGERW QGHEVPPGCE 5050
QSCRDILDET PANCTPSPSP GCTCEPGHYR NSSGHCVPST LCECLHQGQL 5100
HQPGSEWQEQ CARCRCVDGK ANCTDGCTPL SCPEGEVKVR EPGRCCPVCR 5150
MEWPEEPSSM CRRFTELRNI TKGPCSLPNV EVSFCSGRCP SRTAVTPEEP 5200
YLQTLCECCS YRLDPGSPVR ILSLPCAGGA AEPVVLPIIH SCECSSCQGG 5250
DFSKR 5255
Length:5,255
Mass (Da):560,556
Last modified:February 7, 2006 - v1
Checksum:iDBE892EA9AA0378B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ866919 mRNA. Translation: CAI29216.1.
RefSeqiNP_001006351.2. NM_001006351.2.
UniGeneiGga.33700.
Gga.52789.

Genome annotation databases

GeneIDi420367.
KEGGigga:420367.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ866919 mRNA. Translation: CAI29216.1 .
RefSeqi NP_001006351.2. NM_001006351.2.
UniGenei Gga.33700.
Gga.52789.

3D structure databases

ProteinModelPortali Q2PC93.
SMRi Q2PC93. Positions 3059-3085.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9031.ENSGALP00000038585.

Proteomic databases

PaxDbi Q2PC93.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 420367.
KEGGi gga:420367.

Organism-specific databases

CTDi 23145.

Phylogenomic databases

eggNOGi NOG12793.
HOVERGENi HBG080794.
PhylomeDBi Q2PC93.

Miscellaneous databases

NextBioi 20823284.

Family and domain databases

Gene3Di 2.60.120.260. 1 hit.
4.10.400.10. 13 hits.
InterProi IPR000421. Coagulation_fac_5/8-C_type_dom.
IPR006207. Cys_knot_C.
IPR008979. Galactose-bd-like.
IPR023415. LDLR_class-A_CS.
IPR002172. LDrepeatLR_classA_rpt.
IPR000884. Thrombospondin_1_rpt.
IPR002919. TIL_dom.
IPR014853. Unchr_dom_Cys-rich.
IPR001007. VWF_C.
IPR001846. VWF_type-D.
[Graphical view ]
Pfami PF08742. C8. 3 hits.
PF00754. F5_F8_type_C. 1 hit.
PF00057. Ldl_recept_a. 11 hits.
PF01826. TIL. 13 hits.
PF00090. TSP_1. 25 hits.
PF00093. VWC. 1 hit.
PF00094. VWD. 3 hits.
[Graphical view ]
PRINTSi PR00261. LDLRECEPTOR.
SMARTi SM00832. C8. 3 hits.
SM00231. FA58C. 1 hit.
SM00192. LDLa. 13 hits.
SM00209. TSP1. 27 hits.
SM00214. VWC. 5 hits.
SM00216. VWD. 3 hits.
[Graphical view ]
SUPFAMi SSF49785. SSF49785. 1 hit.
SSF57424. SSF57424. 12 hits.
SSF57567. SSF57567. 15 hits.
SSF82895. SSF82895. 25 hits.
PROSITEi PS01225. CTCK_2. 1 hit.
PS01285. FA58C_1. 1 hit.
PS01286. FA58C_2. 1 hit.
PS50022. FA58C_3. 1 hit.
PS01209. LDLRA_1. 11 hits.
PS50068. LDLRA_2. 13 hits.
PS50092. TSP1. 27 hits.
PS01208. VWFC_1. 1 hit.
PS50184. VWFC_2. 2 hits.
PS51233. VWFD. 3 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Characterization of SCO-spondin in chick embryos."
    Didier R.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: CNS.

Entry informationi

Entry nameiSSPO_CHICK
AccessioniPrimary (citable) accession number: Q2PC93
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: February 7, 2006
Last modified: June 11, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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