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Protein

1,4-alpha-glucan branching enzyme GlgB 1

Gene

glgB1

Organism
Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathway: glycogen biosynthesis

This protein is involved in the pathway glycogen biosynthesis, which is part of Glycan biosynthesis.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway glycogen biosynthesis and in Glycan biosynthesis.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei422 – 4221NucleophileUniRule annotation
Active sitei475 – 4751Proton donorUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciXORY342109:GIX9-65-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB 1UniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1UniRule annotation
Alpha-(1->4)-glucan branching enzyme 1UniRule annotation
Glycogen branching enzyme 1UniRule annotation
Short name:
BE 1UniRule annotation
Gene namesi
Name:glgB1UniRule annotation
Ordered Locus Names:XOO0065
OrganismiXanthomonas oryzae pv. oryzae (strain MAFF 311018)
Taxonomic identifieri342109 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7447441,4-alpha-glucan branching enzyme GlgB 1PRO_0000260718Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ2P9F7.
SMRiQ2P9F7. Positions 139-744.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000061021.
KOiK00700.
OMAiWELFLPR.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2P9F7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSERQGGQEQ DREADGVTTE GISEMSQTLQ ALADGLPVDA FAVLGPHPLA
60 70 80 90 100
DGRRQVRVLA PGAEAMGLID SRGKLLARMQ ASAIDGVFEG ILSIEGPYRL
110 120 130 140 150
RIVWPDMVQE IEDPYAFAVT LDESLLLQIA AGDGQALRRA LGAQHVQCGE
160 170 180 190 200
VPGVRFAVWA PHAQRVAVVG DFNGWDVRRH PMRQRIGGFW ELFLPRVEAG
210 220 230 240 250
PRYKYAVTAA DGRVLLKADP VARQTELPPA TASVVPGTDT FAWTDAAWMA
260 270 280 290 300
KRDPSAVPAP LSIYEVHAAS WRRDGHNQPL DWPTLAEQLI PYVQQLRFTH
310 320 330 340 350
IELLPITEHP FGGSWGYQPL GLYAPTARHG SPDGFAQFVD ACHRAGIGVI
360 370 380 390 400
LDWVSAHFPD DAHGLAQFDG AALYEHADPR EGMHRDWNTL IYNYGRPEVT
410 420 430 440 450
AYLLGSALEW IDHYHLDGLR VDAVASMLYR DYGRAEGEWV PNAHGGRENL
460 470 480 490 500
EAVAFLRQLN REIAAHFPGV LTIAEESTAW PGVTAAISDG GLGFTHKWNM
510 520 530 540 550
GWMHDTLSYM QRDPAERAHH HSQLTFGLVY AFDERFVLPI SHDEVVHGTG
560 570 580 590 600
GLLGQMPGDD WRRFANLRAY LALMWAHPGD KLLFMGAEFG QWADWNHDQS
610 620 630 640 650
LDWHLLEGAR HRGVQLLVGD LNATLRRTPA LYRGTHRAKG FDWSVADDAR
660 670 680 690 700
NSVLAFIRHD PDGGGVPLLA VSNLTAQPLH DYGVGVPRAG AWREILNTDS
710 720 730 740
AHYGGSNLGN SGRLATEPMG MHGHAQRLRL TLPPLATIYL QAEK
Length:744
Mass (Da):82,101
Last modified:February 7, 2006 - v1
Checksum:iF12478404DC553B7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008229 Genomic DNA. Translation: BAE66820.1.
RefSeqiWP_011407200.1. NC_007705.1.
YP_449094.1. NC_007705.1.

Genome annotation databases

EnsemblBacteriaiBAE66820; BAE66820; BAE66820.
KEGGixom:XOO_0065.
PATRICi24109216. VBIXanOry49434_0070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008229 Genomic DNA. Translation: BAE66820.1.
RefSeqiWP_011407200.1. NC_007705.1.
YP_449094.1. NC_007705.1.

3D structure databases

ProteinModelPortaliQ2P9F7.
SMRiQ2P9F7. Positions 139-744.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE66820; BAE66820; BAE66820.
KEGGixom:XOO_0065.
PATRICi24109216. VBIXanOry49434_0070.

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000061021.
KOiK00700.
OMAiWELFLPR.
OrthoDBiEOG6JX7GT.

Enzyme and pathway databases

UniPathwayiUPA00164.
BioCyciXORY342109:GIX9-65-MONOMER.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity."
    Ochiai H., Inoue Y., Takeya M., Sasaki A., Kaku H.
    Jpn. Agric. Res. Q. 39:275-287(2005)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MAFF 311018.

Entry informationi

Entry nameiGLGB1_XANOM
AccessioniPrimary (citable) accession number: Q2P9F7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: February 7, 2006
Last modified: June 24, 2015
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.