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Q2P9F7

- GLGB1_XANOM

UniProt

Q2P9F7 - GLGB1_XANOM

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Protein
1,4-alpha-glucan branching enzyme GlgB 1
Gene
glgB1, XOO0065
Organism
Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei422 – 4221Nucleophile By similarity
Active sitei475 – 4751Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciXORY342109:GIX9-65-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB 1 (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1
Alpha-(1->4)-glucan branching enzyme 1
Glycogen branching enzyme 1
Short name:
BE 1
Gene namesi
Name:glgB1
Ordered Locus Names:XOO0065
OrganismiXanthomonas oryzae pv. oryzae (strain MAFF 311018)
Taxonomic identifieri342109 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001957: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7447441,4-alpha-glucan branching enzyme GlgB 1UniRule annotation
PRO_0000260718Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi342109.XOO_0065.

Structurei

3D structure databases

ProteinModelPortaliQ2P9F7.
SMRiQ2P9F7. Positions 139-744.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000061021.
KOiK00700.
OMAiALEWIEH.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2P9F7-1 [UniParc]FASTAAdd to Basket

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MSERQGGQEQ DREADGVTTE GISEMSQTLQ ALADGLPVDA FAVLGPHPLA    50
DGRRQVRVLA PGAEAMGLID SRGKLLARMQ ASAIDGVFEG ILSIEGPYRL 100
RIVWPDMVQE IEDPYAFAVT LDESLLLQIA AGDGQALRRA LGAQHVQCGE 150
VPGVRFAVWA PHAQRVAVVG DFNGWDVRRH PMRQRIGGFW ELFLPRVEAG 200
PRYKYAVTAA DGRVLLKADP VARQTELPPA TASVVPGTDT FAWTDAAWMA 250
KRDPSAVPAP LSIYEVHAAS WRRDGHNQPL DWPTLAEQLI PYVQQLRFTH 300
IELLPITEHP FGGSWGYQPL GLYAPTARHG SPDGFAQFVD ACHRAGIGVI 350
LDWVSAHFPD DAHGLAQFDG AALYEHADPR EGMHRDWNTL IYNYGRPEVT 400
AYLLGSALEW IDHYHLDGLR VDAVASMLYR DYGRAEGEWV PNAHGGRENL 450
EAVAFLRQLN REIAAHFPGV LTIAEESTAW PGVTAAISDG GLGFTHKWNM 500
GWMHDTLSYM QRDPAERAHH HSQLTFGLVY AFDERFVLPI SHDEVVHGTG 550
GLLGQMPGDD WRRFANLRAY LALMWAHPGD KLLFMGAEFG QWADWNHDQS 600
LDWHLLEGAR HRGVQLLVGD LNATLRRTPA LYRGTHRAKG FDWSVADDAR 650
NSVLAFIRHD PDGGGVPLLA VSNLTAQPLH DYGVGVPRAG AWREILNTDS 700
AHYGGSNLGN SGRLATEPMG MHGHAQRLRL TLPPLATIYL QAEK 744
Length:744
Mass (Da):82,101
Last modified:February 7, 2006 - v1
Checksum:iF12478404DC553B7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008229 Genomic DNA. Translation: BAE66820.1.
RefSeqiWP_011407200.1. NC_007705.1.
YP_449094.1. NC_007705.1.

Genome annotation databases

EnsemblBacteriaiBAE66820; BAE66820; BAE66820.
GeneIDi3859717.
KEGGixom:XOO_0065.
PATRICi24109216. VBIXanOry49434_0070.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008229 Genomic DNA. Translation: BAE66820.1 .
RefSeqi WP_011407200.1. NC_007705.1.
YP_449094.1. NC_007705.1.

3D structure databases

ProteinModelPortali Q2P9F7.
SMRi Q2P9F7. Positions 139-744.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 342109.XOO_0065.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAE66820 ; BAE66820 ; BAE66820 .
GeneIDi 3859717.
KEGGi xom:XOO_0065.
PATRICi 24109216. VBIXanOry49434_0070.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000061021.
KOi K00700.
OMAi ALEWIEH.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci XORY342109:GIX9-65-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity."
    Ochiai H., Inoue Y., Takeya M., Sasaki A., Kaku H.
    Jpn. Agric. Res. Q. 39:275-287(2005)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MAFF 311018.

Entry informationi

Entry nameiGLGB1_XANOM
AccessioniPrimary (citable) accession number: Q2P9F7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: February 7, 2006
Last modified: September 3, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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