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Q2P949

- GLGB2_XANOM

UniProt

Q2P949 - GLGB2_XANOM

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Protein

1,4-alpha-glucan branching enzyme GlgB 2

Gene
glgB2, XOO0173
Organism
Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei410 – 4101Nucleophile By similarity
Active sitei463 – 4631Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciXORY342109:GIX9-173-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB 2 (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2
Alpha-(1->4)-glucan branching enzyme 2
Glycogen branching enzyme 2
Short name:
BE 2
Gene namesi
Name:glgB2
Ordered Locus Names:XOO0173
OrganismiXanthomonas oryzae pv. oryzae (strain MAFF 311018)
Taxonomic identifieri342109 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001957: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7317311,4-alpha-glucan branching enzyme GlgB 2UniRule annotationPRO_0000260719Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi342109.XOO_0173.

Structurei

3D structure databases

ProteinModelPortaliQ2P949.
SMRiQ2P949. Positions 119-730.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000051222.
KOiK00700.
OMAiISEGRHE.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2P949-1 [UniParc]FASTAAdd to Basket

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MSGVMTAVSN RWDPGVIRAL AEARHGDAFA VLGAHRTDTG RVLRTYLPGA    50
ERVSAVLDDG QTIALEAGPE PGLFAGDLPA QGGYRLRIGW PGGEQDTADP 100
YAFGPQLSDF DLHLISEGHH LQLADALGAN VVEVDGVRGT RFAVWAPNAS 150
RVAVVGDFNS WDARRHPMRL RHQSGVWELF VPDVGPGAHY KYQLRGPHGH 200
ELPAKADPVA RRAELAPGTA SIVADPTPYQ WSDDGWMATR ARRQAHDAPM 250
SVYEMHAGSW LREEGVDLDW DGLADRLIPY VADMGFTHVE LMPVTEHPFG 300
GSWGYQPLGL FAPTARFGTP DGFARFVDRC HREGIGVIVD WVPAHFPTDA 350
HGLAHFDGTA LYEHADPREG FHRDWNTLIY NHGRREVSGF LIASAMEFLQ 400
RYHVDGLRVD AVASMLYRDY SRNAGEWVPN IHGGRENYET IAFLRRLNAL 450
VREHTPGAVM IAEESTAFPG VTADVAHGGL GFHYKWNMGW MHDTLHYAGL 500
DPIYRRYHHG ELTFSMVYAY SERFVLPISH DEVVHGKGSL LGRMPGDDWQ 550
RFANLRAYLG FMFTHPGRKL LFMGCEFGQP TEWNHDSGLP WHLLDDPRHR 600
GVQTLVRDVN RLYVQYPALH AHDDDPSGFA WVVGDDAGNS VVAFLRKGKR 650
GDAPVLVVIN FTPVVQHGYR IGVPQGGQWR EVFNSDAGIY GGANLGNGGI 700
VTAEQQSMHG HAHALPLLLP PLGAIVLTPP G 731
Length:731
Mass (Da):80,781
Last modified:February 7, 2006 - v1
Checksum:i661BA6EE50D4FAAA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008229 Genomic DNA. Translation: BAE66928.1.
RefSeqiWP_011407266.1. NC_007705.1.
YP_449202.1. NC_007705.1.

Genome annotation databases

EnsemblBacteriaiBAE66928; BAE66928; BAE66928.
GeneIDi3859276.
KEGGixom:XOO_0173.
PATRICi24109459. VBIXanOry49434_0191.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008229 Genomic DNA. Translation: BAE66928.1 .
RefSeqi WP_011407266.1. NC_007705.1.
YP_449202.1. NC_007705.1.

3D structure databases

ProteinModelPortali Q2P949.
SMRi Q2P949. Positions 119-730.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 342109.XOO_0173.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAE66928 ; BAE66928 ; BAE66928 .
GeneIDi 3859276.
KEGGi xom:XOO_0173.
PATRICi 24109459. VBIXanOry49434_0191.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000051222.
KOi K00700.
OMAi ISEGRHE.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci XORY342109:GIX9-173-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity."
    Ochiai H., Inoue Y., Takeya M., Sasaki A., Kaku H.
    Jpn. Agric. Res. Q. 39:275-287(2005)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MAFF 311018.

Entry informationi

Entry nameiGLGB2_XANOM
AccessioniPrimary (citable) accession number: Q2P949
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: February 7, 2006
Last modified: September 3, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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