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Q2P8B1 (SYR_XANOM) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase

EC=6.1.1.19
Alternative name(s):
Arginyl-tRNA synthetase
Short name=ArgRS
Gene names
Name:argS
Ordered Locus Names:XOO0461
OrganismXanthomonas oryzae pv. oryzae (strain MAFF 311018) [Complete proteome] [HAMAP]
Taxonomic identifier342109 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

Protein attributes

Sequence length562 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP-Rule MF_00123

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00123

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processarginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

arginine-tRNA ligase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 562562Arginine--tRNA ligase HAMAP-Rule MF_00123
PRO_0000242126

Regions

Motif129 – 13911"HIGH" region HAMAP-Rule MF_00123

Sequences

Sequence LengthMass (Da)Tools
Q2P8B1 [UniParc].

Last modified February 7, 2006. Version 1.
Checksum: C41CE9B3546FCE81

FASTA56262,016
        10         20         30         40         50         60 
MKALLRALIG QGIEALRANG TLPGDTLPPD FVVERPKTRE HGDFATNAAM LLAKAARSNP 

        70         80         90        100        110        120 
RALAQALLTA LPDSNDVTKV EIAGPGFINF HLAPTAYQRE VAHVIKQGHD YGRGLAGNGR 

       130        140        150        160        170        180 
SVGVEYVSAN PTGPLHVGHG RAAAIGDSLA RVLDANGWNV KREFYYNDAG VQIENLALSV 

       190        200        210        220        230        240 
QARAQGLTPD SAGWPENGYR GDYIADVANA YLAGDTVDME GHLVTGTKDP ADLESIRRFA 

       250        260        270        280        290        300 
VAYLRNEQNH DLAAFRVDFD IYFLESSLYK DGKVEEAVQK LIASGHTYEE GGALWLKSTD 

       310        320        330        340        350        360 
FGDDKDRVMR KSDGTYTYFV PDVAYHLTKW QRGYERAITE LGADHHGSLT RVRAGLQAME 

       370        380        390        400        410        420 
LGIPQGWPEY VLHQMVTVMR DGEEVKLGKR AGGYVTLRDL IEETSADAVR WFLIARKPDS 

       430        440        450        460        470        480 
QLTFDIDLAR AQSNDNPVFY VQYAHARVCS VLRQAQEKGY KYDQVHGLAE LARLDDEHSL 

       490        500        510        520        530        540 
AVMLELSRYP EVVEIAGQTL EPYQIAQYLR ELAHAFHTWY HNSKVLVDDA AERDAKLTLA 

       550        560 
VATQQVLANG LELLGVSAPE KM 

« Hide

References

[1]"Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity."
Ochiai H., Inoue Y., Takeya M., Sasaki A., Kaku H.
Jpn. Agric. Res. Q. 39:275-287(2005)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MAFF 311018.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP008229 Genomic DNA. Translation: BAE67216.1.
RefSeqYP_449490.1. NC_007705.1.

3D structure databases

ProteinModelPortalQ2P8B1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING342109.XOO_0461.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAE67216; BAE67216; BAE67216.
GeneID3856401.
KEGGxom:XOO_0461.
PATRIC24110127. VBIXanOry49434_0514.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0018.
KOK01887.
OMAMEHMGFG.
OrthoDBEOG6JB13C.

Enzyme and pathway databases

BioCycXORY342109:GIX9-468-MONOMER.

Family and domain databases

Gene3D1.10.730.10. 1 hit.
3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPMF_00123. Arg_tRNA_synth.
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PANTHERPTHR11956. PTHR11956. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsTIGR00456. argS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSYR_XANOM
AccessionPrimary (citable) accession number: Q2P8B1
Entry history
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: February 7, 2006
Last modified: May 14, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries