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Q2NXR2

- XYLA_XANOM

UniProt

Q2NXR2 - XYLA_XANOM

Protein

Xylose isomerase

Gene

xylA1

Organism
Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (07 Feb 2006)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei109 – 1091UniRule annotation
    Active sitei112 – 1121UniRule annotation
    Metal bindingi240 – 2401Magnesium 1UniRule annotation
    Metal bindingi276 – 2761Magnesium 1UniRule annotation
    Metal bindingi276 – 2761Magnesium 2UniRule annotation
    Metal bindingi279 – 2791Magnesium 2UniRule annotation
    Metal bindingi304 – 3041Magnesium 1UniRule annotation
    Metal bindingi315 – 3151Magnesium 2UniRule annotation
    Metal bindingi317 – 3171Magnesium 2UniRule annotation
    Metal bindingi347 – 3471Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Isomerase

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shunt, Xylose metabolism

    Keywords - Ligandi

    Magnesium, Metal-binding

    Enzyme and pathway databases

    BioCyciXORY342109:GIX9-2802-MONOMER.
    XORY342109:GIX9-4219-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylA1UniRule annotation
    Ordered Locus Names:XOO2761, XOO4160
    OrganismiXanthomonas oryzae pv. oryzae (strain MAFF 311018)
    Taxonomic identifieri342109 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000001957: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 445445Xylose isomerasePRO_0000236980Add
    BLAST

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotation

    Protein-protein interaction databases

    STRINGi342109.XOO_4160.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2NXR2.
    SMRiQ2NXR2. Positions 10-445.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2115.
    KOiK01805.
    OMAiLFHAHIG.
    OrthoDBiEOG62NX4R.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q2NXR2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSNTVYIGAK EYFPGIGKIG FEGRESDNPL AFKVYDANKT IGDKTMAEHL    50
    RFAVAYWHSF CGNGADPFGP GTRAYPWDVG NSALARAEAK SDAAFEFFTK 100
    LGVPYYCFHD IDLSPDADDI GEYESNLKHM VGVAKQRQAD TGIKLLWGTA 150
    NLFSHPRYMN GASTNPDFNV VARAAVQVKA AIDATVELGG ENYVFWGGRE 200
    GYACLHNTQM KREQDNMARF LTLARDYGRS IGFTGNFLIE PKPMEPMKHQ 250
    YDFDSATVIG FLRQHGLDQD FKLNIEANHA TLSGHSFEHD LQVASDAGLL 300
    GSIDANRGNP QNGWDTDQFP TDLYDTVGAM LVVLRQGGLA PGGLNFDAKV 350
    RRESSDPQDL FLAHIGGMDA FARGLEVANA LLTSSPLEQW RAERYASFDN 400
    GTGADFAAGK ITLADLAAHA AGNAPKQISG RQEAYENLIN QYLTR 445
    Length:445
    Mass (Da):48,753
    Last modified:February 7, 2006 - v1
    Checksum:iF5EEF245267F746E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008229 Genomic DNA. Translation: BAE70915.1.
    AP008229 Genomic DNA. Translation: BAE69516.1.
    RefSeqiWP_011259480.1. NC_007705.1.
    YP_451790.1. NC_007705.1.
    YP_453189.1. NC_007705.1.

    Genome annotation databases

    EnsemblBacteriaiBAE69516; BAE69516; BAE69516.
    BAE70915; BAE70915; BAE70915.
    GeneIDi3859174.
    3860748.
    KEGGixom:XOO_2761.
    xom:XOO_4160.
    PATRICi24115422. VBIXanOry49434_3128.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP008229 Genomic DNA. Translation: BAE70915.1 .
    AP008229 Genomic DNA. Translation: BAE69516.1 .
    RefSeqi WP_011259480.1. NC_007705.1.
    YP_451790.1. NC_007705.1.
    YP_453189.1. NC_007705.1.

    3D structure databases

    ProteinModelPortali Q2NXR2.
    SMRi Q2NXR2. Positions 10-445.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 342109.XOO_4160.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAE69516 ; BAE69516 ; BAE69516 .
    BAE70915 ; BAE70915 ; BAE70915 .
    GeneIDi 3859174.
    3860748.
    KEGGi xom:XOO_2761.
    xom:XOO_4160.
    PATRICi 24115422. VBIXanOry49434_3128.

    Phylogenomic databases

    eggNOGi COG2115.
    KOi K01805.
    OMAi LFHAHIG.
    OrthoDBi EOG62NX4R.

    Enzyme and pathway databases

    BioCyci XORY342109:GIX9-2802-MONOMER.
    XORY342109:GIX9-4219-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Xanthomonas oryzae pv. oryzae suggests contribution of large numbers of effector genes and insertion sequences to its race diversity."
      Ochiai H., Inoue Y., Takeya M., Sasaki A., Kaku H.
      Jpn. Agric. Res. Q. 39:275-287(2005)
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MAFF 311018.

    Entry informationi

    Entry nameiXYLA_XANOM
    AccessioniPrimary (citable) accession number: Q2NXR2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2006
    Last sequence update: February 7, 2006
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3