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Protein

Ribosome biogenesis protein Nop10

Gene

nop10

Organism
Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Enzyme and pathway databases

BioCyciMSTA339860:GJEZ-1528-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome biogenesis protein Nop10UniRule annotation
Gene namesi
Name:nop10UniRule annotation
Ordered Locus Names:Msp_1525
OrganismiMethanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)
Taxonomic identifieri339860 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanobacteriaMethanobacterialesMethanobacteriaceaeMethanosphaera
Proteomesi
  • UP000001931 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 5555Ribosome biogenesis protein Nop10PRO_1000083705Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi339860.Msp_1525.

Structurei

3D structure databases

ProteinModelPortaliQ2NE61.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the NOP10 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG00906. Archaea.
COG2260. LUCA.
HOGENOMiHOG000224954.
KOiK11130.
OMAiFRIRKCP.

Family and domain databases

HAMAPiMF_00803. Nop10. 1 hit.
InterProiIPR007264. H/ACA_rnp_Nop10.
IPR023532. Nop10_arc-typ.
[Graphical view]
PANTHERiPTHR13305. PTHR13305. 1 hit.
PfamiPF04135. Nop10p. 1 hit.
[Graphical view]
SUPFAMiSSF144210. SSF144210. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2NE61-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFQMRKCKE CGEYTLEESC PECNVKTGVI FPARYSPQDK YGKYRRILKR

QQMEK
Length:55
Mass (Da):6,655
Last modified:February 7, 2006 - v1
Checksum:iD26FE657683AA7C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000102 Genomic DNA. Translation: ABC57892.1.
RefSeqiWP_011407091.1. NC_007681.1.

Genome annotation databases

EnsemblBacteriaiABC57892; ABC57892; Msp_1525.
GeneIDi3854755.
KEGGimst:Msp_1525.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000102 Genomic DNA. Translation: ABC57892.1.
RefSeqiWP_011407091.1. NC_007681.1.

3D structure databases

ProteinModelPortaliQ2NE61.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi339860.Msp_1525.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC57892; ABC57892; Msp_1525.
GeneIDi3854755.
KEGGimst:Msp_1525.

Phylogenomic databases

eggNOGiarCOG00906. Archaea.
COG2260. LUCA.
HOGENOMiHOG000224954.
KOiK11130.
OMAiFRIRKCP.

Enzyme and pathway databases

BioCyciMSTA339860:GJEZ-1528-MONOMER.

Family and domain databases

HAMAPiMF_00803. Nop10. 1 hit.
InterProiIPR007264. H/ACA_rnp_Nop10.
IPR023532. Nop10_arc-typ.
[Graphical view]
PANTHERiPTHR13305. PTHR13305. 1 hit.
PfamiPF04135. Nop10p. 1 hit.
[Graphical view]
SUPFAMiSSF144210. SSF144210. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiNOP10_METST
AccessioniPrimary (citable) accession number: Q2NE61
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 7, 2006
Last modified: February 17, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.