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Q2N379

- Q2N379_9CALI

UniProt

Q2N379 - Q2N379_9CALI

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Protein
Submitted name: ORF1
Gene
N/A
Organism
Norovirus Hu/GII.4/Sydney348/97O/AU
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).SAAS annotations

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi240 – 2401MagnesiumImported
Metal bindingi344 – 3441MagnesiumImported
Metal bindingi345 – 3451Magnesium; via carbonyl oxygenImported
Metal bindingi389 – 3891Magnesium; via carbonyl oxygenImported

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. RNA binding Source: InterPro
  3. RNA-directed RNA polymerase activity Source: UniProtKB-KW
  4. helicase activity Source: InterPro
  5. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. transcription, DNA-templated Source: InterPro
  2. viral RNA genome replication Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, RNA-directed RNA polymeraseSAAS annotations, Transferase

Keywords - Ligandi

MagnesiumImported, Metal-bindingImported

Names & Taxonomyi

Protein namesi
Submitted name:
ORF1Imported
OrganismiNorovirus Hu/GII.4/Sydney348/97O/AUImported
Taxonomic identifieri332872 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeNorovirus

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4LQ3X-ray2.60A3-510[»]
4LQ9X-ray2.04A3-510[»]
ProteinModelPortaliQ2N379.

Family & Domainsi

Family and domain databases

InterProiIPR004004. Helic/Pol/Pept_Calicivir-typ.
IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
[Graphical view]
PfamiPF00680. RdRP_1. 1 hit.
[Graphical view]
PRINTSiPR00918. CALICVIRUSNS.
PROSITEiPS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q2N379-1 [UniParc]FASTAAdd to Basket

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GDDSKGTYCG APILGPGSAP KLSTKTKFWR SSTTPLPPGT YEPAYLGGKD    50
PRVKGGPSLQ QVMRDQLKPF TEPRGKPPKP SVLEAAKKTI INVLEQTIDP 100
PEKWSFTQAC ASLDKTTSSG HPHHMRKNDC WNGESFTGKL ADQASKANLM 150
FEEGKNMTPV YTGALKDELV KTDKIYGKIK KRLLWGSDLA TMIRCARAFG 200
GLMDELKAHC VTLPIRVGMN MNEDGPIIFE RHSRYKYHYD ADYSRWDSTQ 250
QRAVLAAALE IMVKFSSEPH LAQVVAEDLL SPSVVDVGDF KISINEGLPS 300
GVPCTSQWNS IAHWLLTLCA LSEVTNLSPD IIQANSLFSF YGDDEIVSTD 350
IKLDPEKLTA KLKEYGLKPT RPDKTEGPLV ISEDLNGLTF LRRTVTRDPA 400
GWFGKLEQSS ILRQMYWTRG PNHEDPSETM IPHSQRPIQL MSLLGEAALH 450
GPAFYSKISK LVIAELKEGG MDFYVPRQEP MFRWMRFSDL STWEGDRNLA 500
PSFVNEDGVE 510
Length:510
Mass (Da):56,844
Last modified:February 7, 2006 - v1
Checksum:iDE89880415A7AD72
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ078829 Genomic RNA. Translation: ABC59067.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ078829 Genomic RNA. Translation: ABC59067.1 .

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4LQ3 X-ray 2.60 A 3-510 [» ]
4LQ9 X-ray 2.04 A 3-510 [» ]
ProteinModelPortali Q2N379.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

InterProi IPR004004. Helic/Pol/Pept_Calicivir-typ.
IPR001205. RNA-dir_pol_C.
IPR007094. RNA-dir_pol_PSvirus.
[Graphical view ]
Pfami PF00680. RdRP_1. 1 hit.
[Graphical view ]
PRINTSi PR00918. CALICVIRUSNS.
PROSITEi PS50507. RDRP_SSRNA_POS. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Emergence of a new norovirus genotype II.4 variant associated with global outbreaks of gastroenteritis."
    Bull R.A., Tu E.T., McIver C.J., Rawlinson W.D., White P.A.
    J. Clin. Microbiol. 44:327-333(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Sydney348/97OImported.
  2. "Naphthalene-sulfonate inhibitors of human norovirus RNA-dependent RNA-polymerase."
    Tarantino D., Pezzullo M., Mastrangelo E., Croci R., Rohayem J., Robel I., Bolognesi M., Milani M.
    Antiviral Res. 102:23-28(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.04 ANGSTROMS) OF 3-510 IN COMPLEX WITH MAGNESIUM.

Entry informationi

Entry nameiQ2N379_9CALI
AccessioniPrimary (citable) accession number: Q2N379
Entry historyi
Integrated into UniProtKB/TrEMBL: February 7, 2006
Last sequence update: February 7, 2006
Last modified: July 9, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3

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