Sex determining region Y - Rangifer tarandus (Reindeer)

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Unreviewed, UniProtKB/TrEMBL Q2MGT9 (Q2MGT9_RANTA)

Last modified November 3, 2009. Version 17. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Sex determining region Y EMBL BAE78533.1

Gene names

Name:

SRY EMBL BAE78533.1

Organism

Rangifer tarandus (Reindeer) (Caribou) EMBL BAE78533.1

Taxonomic identifier

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Cetartiodactyla › Ruminantia › Pecora › Cervidae › Odocoileinae › Rangifer

Protein attributes

Sequence length	229 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

General annotation (Comments)

Sequence similarities

Contains 1 HMG box DNA-binding domain. Spearmint SPM000910

Ontologies

Keywords
Biological process	Differentiation Sexual differentiation Spearmint SPM000910 Transcription Transcription regulation Spearmint SPM000910
Cellular component	Nucleus Spearmint SPM000910
Ligand	DNA-binding Spearmint SPM000910
Molecular function	Activator Spearmint SPM000910
Gene Ontology (GO)
Biological process	cell differentiation Inferred from electronic annotation. Source: UniProtKB-KW male sex determination Inferred from electronic annotation. Source: InterPro regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	protein binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q2MGT9-1 [UniParc].

Last modified February 21, 2006. Version 1.
Checksum: 541885529C4FB7A8
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229

26,771

        10         20         30         40         50         60 
MFRVLNDDVY STAKIQQQNP LAFGKASSLF TDNRSANDQC ETGENVRDSG QDHVKRPMNA 

        70         80         90        100        110        120 
FIVWSRERRR KVALENPKMQ NSEISKQLGY EWKRLTDAEK RPFFEEAQRL LAIHRDKYPG 

       130        140        150        160        170        180 
YKYRPRRKTK RHQKLLPADS SILRKQMHVE TLQPFTYRDG CAKTTCSRME SQLSLSQPVT 

       190        200        210        220 
ITNSFLQKEH HSSWTNLGHN RVTLATQISA DFPFYQSLQP GLSCSYFQY

References

[1]	"Sry gene in Cervidae." Wada K., Nishibori M., Yokohama M. Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: Liver EMBL BAE78533.1.

Cross-references

Sequence databases
	AB247629 Genomic DNA. Translation: BAE78533.1.
3D structure databases
SMR	Q2MGT9. Positions 51-130.
ModBase	Search...
Phylogenomic databases
HOVERGEN	Q2MGT9.
Family and domain databases
InterPro	IPR000910. HMG_HMG1/HMG2. IPR009071. HMG_superfamily. IPR017253. Sex-determining_region_Y. [Graphical view]
Gene3D	G3DSA:1.10.30.10. HMG-box. 1 hit.
Pfam	PF00505. HMG_box. 1 hit. [Graphical view]
PIRSF	PIRSF037653. SRY. 1 hit.
SMART	SM00398. HMG. 1 hit. [Graphical view]
PROSITE	PS50118. HMG_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2MGT9_RANTA

Accession

Primary (citable) accession number: Q2MGT9

Entry history

Integrated into UniProtKB/TrEMBL:	February 21, 2006
Last sequence update:	February 21, 2006
Last modified:	November 3, 2009
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information