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Protein

UPF0391 membrane protein YtjA

Gene

ytjA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2697.
ECOL316407:JW5891-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0391 membrane protein YtjAUniRule annotation
Gene namesi
Name:ytjAUniRule annotation
Ordered Locus Names:b4568, JW5891
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14398. ytjA.

Subcellular locationi

  • Cell membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei4 – 24HelicalUniRule annotationAdd BLAST21
Transmembranei30 – 48HelicalUniRule annotationAdd BLAST19

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002567331 – 53UPF0391 membrane protein YtjAAdd BLAST53

Proteomic databases

PaxDbiQ2M5U1.
PRIDEiQ2M5U1.

Interactioni

Protein-protein interaction databases

STRINGi511145.b4568.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0391 family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000237282.
OMAiRWAILFA.

Family and domain databases

HAMAPiMF_01361. UPF0391. 1 hit.
InterProiIPR009760. DUF1328.
[Graphical view]
PfamiPF07043. DUF1328. 1 hit.
[Graphical view]
PIRSFiPIRSF036466. UCP036466. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2M5U1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFRWGIIFLV IALIAAALGF GGLAGTAAGA AKIVFVVGII LFLVSLFMGR

KRP
Length:53
Mass (Da):5,536
Last modified:October 31, 2006 - v2
Checksum:iE787FA90AE424536
GO

Sequence cautioni

The sequence BAE78365 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ABD18720.2.
AP009048 Genomic DNA. Translation: BAE78365.1. Different initiation.
RefSeqiWP_000490275.1. NZ_LN832404.1.
YP_588479.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiABD18720; ABD18720; b4568.
BAE78365; BAE78365; BAE78365.
GeneIDi1450298.
KEGGiecj:JW5891.
eco:b4568.
PATRICi32124364. VBIEscCol129921_4522.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ABD18720.2.
AP009048 Genomic DNA. Translation: BAE78365.1. Different initiation.
RefSeqiWP_000490275.1. NZ_LN832404.1.
YP_588479.2. NC_000913.3.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi511145.b4568.

Proteomic databases

PaxDbiQ2M5U1.
PRIDEiQ2M5U1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD18720; ABD18720; b4568.
BAE78365; BAE78365; BAE78365.
GeneIDi1450298.
KEGGiecj:JW5891.
eco:b4568.
PATRICi32124364. VBIEscCol129921_4522.

Organism-specific databases

EcoGeneiEG14398. ytjA.

Phylogenomic databases

HOGENOMiHOG000237282.
OMAiRWAILFA.

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2697.
ECOL316407:JW5891-MONOMER.

Miscellaneous databases

PROiQ2M5U1.

Family and domain databases

HAMAPiMF_01361. UPF0391. 1 hit.
InterProiIPR009760. DUF1328.
[Graphical view]
PfamiPF07043. DUF1328. 1 hit.
[Graphical view]
PIRSFiPIRSF036466. UCP036466. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYTJA_ECOLI
AccessioniPrimary (citable) accession number: Q2M5U1
Secondary accession number(s): Q2EEU4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: October 31, 2006
Last modified: November 2, 2016
This is version 73 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.