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Protein

Zinc finger protein 423

Gene

ZNF423

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Transcription factor that can both act as an activator or a repressor depending on the context. Plays a central role in BMP signaling and olfactory neurogenesis. Associates with SMADs in response to BMP2 leading to activate transcription of BMP target genes. Acts as a transcriptional repressor via its interaction with EBF1, a transcription factor involved in terminal olfactory receptor neurons differentiation; this interaction preventing EBF1 to bind DNA and activate olfactory-specific genes. Involved in olfactory neurogenesis by participating in a developmental switch that regulates the transition from differentiation to maturation in olfactory receptor neurons. Controls proliferation and differentiation of neural precursors in cerebellar vermis formation.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri67 – 9327C2H2-type 1; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri138 – 16023C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri166 – 18823C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri194 – 21623C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri222 – 24423C2H2-type 5PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri263 – 28624C2H2-type 6PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri295 – 31824C2H2-type 7PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri323 – 34523C2H2-type 8PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri409 – 43325C2H2-type 9; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri441 – 46424C2H2-type 10PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri480 – 50324C2H2-type 11PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri517 – 54024C2H2-type 12PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri563 – 58826C2H2-type 13; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri632 – 65423C2H2-type 14PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri662 – 68423C2H2-type 15PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri692 – 71524C2H2-type 16PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri720 – 74324C2H2-type 17PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri750 – 77324C2H2-type 18PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri781 – 80323C2H2-type 19PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri807 – 83024C2H2-type 20PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri886 – 90823C2H2-type 21; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri930 – 95223C2H2-type 22PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri959 – 98123C2H2-type 23PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1020 – 104223C2H2-type 24PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1064 – 108219C2H2-type 25; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1120 – 114324C2H2-type 26PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1168 – 119023C2H2-type 27PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1198 – 122023C2H2-type 28PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1229 – 125224C2H2-type 29PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1259 – 128224C2H2-type 30PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator, Developmental protein, Repressor

Keywords - Biological processi

Differentiation, Neurogenesis, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein 423
Alternative name(s):
Olf1/EBF-associated zinc finger protein
Short name:
hOAZ
Smad- and Olf-interacting zinc finger protein
Gene namesi
Name:ZNF423
Synonyms:KIAA0760, NPHP14, OAZ
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 16

Organism-specific databases

HGNCiHGNC:16762. ZNF423.

Subcellular locationi

  • Nucleus 1 Publication

GO - Cellular componenti

  • nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Involvement in diseasei

Nephronophthisis 14 (NPHP14)1 Publication

The disease is caused by mutations affecting the gene represented in this entry.

Disease descriptionAn autosomal recessive disorder manifesting as infantile-onset kidney disease, cerebellar vermis hypoplasia, and situs inversus. Nephronophthisis is a progressive tubulo-interstitial kidney disorder histologically characterized by modifications of the tubules with thickening of the basement membrane, interstitial fibrosis and, in the advanced stages, medullary cysts.

See also OMIM:614844
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti913 – 9131P → L in NPHP14; found at homozygosity in two siblings with nephronophthisis, cerebellar vermis hypoplasia and situs inversus. 1 Publication
Corresponds to variant rs200585917 [ dbSNP | Ensembl ].
VAR_068501
Joubert syndrome 19 (JBTS19)1 Publication

The disease is caused by mutations affecting the gene represented in this entry.

Disease descriptionA form of Joubert syndrome, a disorder presenting with cerebellar ataxia, oculomotor apraxia, hypotonia, neonatal breathing abnormalities and psychomotor delay. Neuroradiologically, it is characterized by cerebellar vermian hypoplasia/aplasia, thickened and reoriented superior cerebellar peduncles, and an abnormally large interpeduncular fossa, giving the appearance of a molar tooth on transaxial slices (molar tooth sign). JBTS19 patients have polycystic kidney disease, Leber congenital amaurosis, cerebellar vermis hypoplasia, and breathing abnormality.

See also OMIM:614844
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti1277 – 12771H → Y in JBTS19. 1 Publication
VAR_068502

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi420 – 4201N → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-426; A-452; A-458; A-491; A-497; A-528; A-534; A-574 and A-581. 1 Publication
Mutagenesisi426 – 4261E → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-452; A-458; A-491; A-497; A-528; A-534; A-574 and A-581. 1 Publication
Mutagenesisi452 – 4521T → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-426; A-458; A-491; A-497; A-528; A-534; A-574 and A-581. 1 Publication
Mutagenesisi458 – 4581E → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-426; A-452; A-491; A-497; A-528; A-534; A-574 and A-581. 1 Publication
Mutagenesisi491 – 4911D → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-426; A-452; A-458; A-497; A-528; A-534; A-574 and A-581. 1 Publication
Mutagenesisi497 – 4971E → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-426; A-452; A-458; A-491; A-528; A-534; A-574 and A-581. 1 Publication
Mutagenesisi528 – 5281T → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-426; A-452; A-458; A-491; A-497; A-534; A-574 and A-581. 1 Publication
Mutagenesisi534 – 5341E → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-426; A-452; A-458; A-491; A-497; A-528; A-574 and A-581. 1 Publication
Mutagenesisi574 – 5741F → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-426; A-452; A-458; A-491; A-497; A-528; A-534 and A-581. 1 Publication
Mutagenesisi581 – 5811T → A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-426; A-452; A-458; A-491; A-497; A-528; A-534 and A-574. 1 Publication

Keywords - Diseasei

Ciliopathy, Disease mutation, Joubert syndrome, Nephronophthisis

Organism-specific databases

MIMi614844. phenotype.
Orphaneti2318. Joubert syndrome with oculorenal defect.
PharmGKBiPA134903681.

Polymorphism and mutation databases

DMDMi121941357.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12841284Zinc finger protein 423PRO_0000308595Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei47 – 471Phosphoserine1 Publication
Modified residuei50 – 501Phosphoserine1 Publication
Modified residuei604 – 6041Phosphoserine1 Publication
Modified residuei1054 – 10541Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ2M1K9.
PRIDEiQ2M1K9.

PTM databases

PhosphoSiteiQ2M1K9.

Expressioni

Tissue specificityi

Expressed in brain, lung, skeletal muscle, heart, pancreas and kidney but not liver or placenta. Also expressed in aorta, ovary, pituitary, small intestine, fetal brain, fetal kidney and, within the adult brain, in the substantia nigra, medulla, amygdala, thalamus and cerebellum.1 Publication

Gene expression databases

BgeeiQ2M1K9.
CleanExiHS_ZNF423.
ExpressionAtlasiQ2M1K9. baseline and differential.
GenevisibleiQ2M1K9. HS.

Organism-specific databases

HPAiHPA015258.

Interactioni

Subunit structurei

Homodimer (By similarity). Interacts with EBF1 (By similarity). Interacts with SMAD1 and SMAD4. Interacts with PARP1. Interacts with CEP290.By similarity2 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
CEP290O150783EBI-950016,EBI-1811944
PARP1P098742EBI-950016,EBI-355676
RARAP102762EBI-950016,EBI-413374

Protein-protein interaction databases

BioGridi116718. 14 interactions.
IntActiQ2M1K9. 9 interactions.
MINTiMINT-2819859.
STRINGi9606.ENSP00000262383.

Structurei

Secondary structure

1
1284
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi933 – 9375Combined sources
Helixi942 – 9498Combined sources
Helixi950 – 9523Combined sources
Beta strandi958 – 9603Combined sources
Beta strandi962 – 9643Combined sources
Beta strandi967 – 9704Combined sources
Helixi973 – 9797Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2MDGNMR-A928-981[»]
ProteinModelPortaliQ2M1K9.
SMRiQ2M1K9. Positions 928-981.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domaini

Uses different DNA- and protein-binding zinc fingers to regulate the distinct BMP-Smad and Olf signaling pathways. C2H2-type zinc fingers 14-19 mediate the interaction with SMAD1 and SMAD4, while zinc fingers 28-30 mediate the interaction with EBF1. zinc fingers 2-8 bind the 5'-CCGCCC-3' DNA sequence in concert with EBF1, while zinc fingers 9-13 bind BMP target gene promoters in concert with SMADs.1 Publication

Sequence similaritiesi

Contains 30 C2H2-type zinc fingers.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri67 – 9327C2H2-type 1; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri138 – 16023C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri166 – 18823C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri194 – 21623C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri222 – 24423C2H2-type 5PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri263 – 28624C2H2-type 6PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri295 – 31824C2H2-type 7PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri323 – 34523C2H2-type 8PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri409 – 43325C2H2-type 9; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri441 – 46424C2H2-type 10PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri480 – 50324C2H2-type 11PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri517 – 54024C2H2-type 12PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri563 – 58826C2H2-type 13; atypicalPROSITE-ProRule annotationAdd
BLAST
Zinc fingeri632 – 65423C2H2-type 14PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri662 – 68423C2H2-type 15PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri692 – 71524C2H2-type 16PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri720 – 74324C2H2-type 17PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri750 – 77324C2H2-type 18PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri781 – 80323C2H2-type 19PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri807 – 83024C2H2-type 20PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri886 – 90823C2H2-type 21; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri930 – 95223C2H2-type 22PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri959 – 98123C2H2-type 23PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1020 – 104223C2H2-type 24PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1064 – 108219C2H2-type 25; degeneratePROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1120 – 114324C2H2-type 26PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1168 – 119023C2H2-type 27PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1198 – 122023C2H2-type 28PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1229 – 125224C2H2-type 29PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri1259 – 128224C2H2-type 30PROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiCOG5048.
GeneTreeiENSGT00790000122954.
HOGENOMiHOG000155793.
HOVERGENiHBG052773.
InParanoidiQ2M1K9.
OMAiFIEHCQM.
OrthoDBiEOG7NGQB0.
PhylomeDBiQ2M1K9.
TreeFamiTF331504.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 4 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 30 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 27 hits.
PS50157. ZINC_FINGER_C2H2_2. 23 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q2M1K9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MHKKRVEEGE ASDFSLAWDS SVTAAGGLEG EPECDQKTSR ALEDRNSVTS
60 70 80 90 100
QEERNEDDED MEDESIYTCD HCQQDFESLA DLTDHRAHRC PGDGDDDPQL
110 120 130 140 150
SWVASSPSSK DVASPTQMIG DGCDLGLGEE EGGTGLPYPC QFCDKSFIRL
160 170 180 190 200
SYLKRHEQIH SDKLPFKCTY CSRLFKHKRS RDRHIKLHTG DKKYHCHECE
210 220 230 240 250
AAFSRSDHLK IHLKTHSSSK PFKCTVCKRG FSSTSSLQSH MQAHKKNKEH
260 270 280 290 300
LAKSEKEAKK DDFMCDYCED TFSQTEELEK HVLTRHPQLS EKADLQCIHC
310 320 330 340 350
PEVFVDENTL LAHIHQAHAN QKHKCPMCPE QFSSVEGVYC HLDSHRQPDS
360 370 380 390 400
SNHSVSPDPV LGSVASMSSA TPDSSASVER GSTPDSTLKP LRGQKKMRDD
410 420 430 440 450
GQGWTKVVYS CPYCSKRDFN SLAVLEIHLK TIHADKPQQS HTCQICLDSM
460 470 480 490 500
PTLYNLNEHV RKLHKNHAYP VMQFGNISAF HCNYCPEMFA DINSLQEHIR
510 520 530 540 550
VSHCGPNANP SDGNNAFFCN QCSMGFLTES SLTEHIQQAH CSVGSAKLES
560 570 580 590 600
PVVQPTQSFM EVYSCPYCTN SPIFGSILKL TKHIKENHKN IPLAHSKKSK
610 620 630 640 650
AEQSPVSSDV EVSSPKRQRL SASANSISNG EYPCNQCDLK FSNFESFQTH
660 670 680 690 700
LKLHLELLLR KQACPQCKED FDSQESLLQH LTVHYMTTST HYVCESCDKQ
710 720 730 740 750
FSSVDDLQKH LLDMHTFVLY HCTLCQEVFD SKVSIQVHLA VKHSNEKKMY
760 770 780 790 800
RCTACNWDFR KEADLQVHVK HSHLGNPAKA HKCIFCGETF STEVELQCHI
810 820 830 840 850
TTHSKKYNCK FCSKAFHAII LLEKHLREKH CVFDAATENG TANGVPPMAT
860 870 880 890 900
KKAEPADLQG MLLKNPEAPN SHEASEDDVD ASEPMYGCDI CGAAYTMEVL
910 920 930 940 950
LQNHRLRDHN IRPGEDDGSR KKAEFIKGSH KCNVCSRTFF SENGLREHLQ
960 970 980 990 1000
THRGPAKHYM CPICGERFPS LLTLTEHKVT HSKSLDTGTC RICKMPLQSE
1010 1020 1030 1040 1050
EEFIEHCQMH PDLRNSLTGF RCVVCMQTVT STLELKIHGT FHMQKLAGSS
1060 1070 1080 1090 1100
AASSPNGQGL QKLYKCALCL KEFRSKQDLV KLDVNGLPYG LCAGCMARSA
1110 1120 1130 1140 1150
NGQVGGLAPP EPADRPCAGL RCPECSVKFE SAEDLESHMQ VDHRDLTPET
1160 1170 1180 1190 1200
SGPRKGTQTS PVPRKKTYQC IKCQMTFENE REIQIHVANH MIEEGINHEC
1210 1220 1230 1240 1250
KLCNQMFDSP AKLLCHLIEH SFEGMGGTFK CPVCFTVFVQ ANKLQQHIFA
1260 1270 1280
VHGQEDKIYD CSQCPQKFFF QTELQNHTMS QHAQ
Length:1,284
Mass (Da):144,605
Last modified:February 21, 2006 - v1
Checksum:iF34CB87161738321
GO
Isoform 2 (identifier: Q2M1K9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-60: Missing.

Note: No experimental confirmation available.Curated
Show »
Length:1,224
Mass (Da):137,950
Checksum:iA2DE880C1AA925F0
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti629 – 6291N → S.
Corresponds to variant rs34214571 [ dbSNP | Ensembl ].
VAR_036844
Natural varianti913 – 9131P → L in NPHP14; found at homozygosity in two siblings with nephronophthisis, cerebellar vermis hypoplasia and situs inversus. 1 Publication
Corresponds to variant rs200585917 [ dbSNP | Ensembl ].
VAR_068501
Natural varianti1277 – 12771H → Y in JBTS19. 1 Publication
VAR_068502

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 6060Missing in isoform 2. VSP_057595Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC112315 mRNA. Translation: AAI12316.1.
BC112317 mRNA. Translation: AAI12318.1.
AF221712 mRNA. Translation: AAF28354.1.
AB018303 mRNA. Translation: BAA34480.2.
CCDSiCCDS32445.1. [Q2M1K9-1]
RefSeqiNP_001258549.1. NM_001271620.1. [Q2M1K9-2]
NP_055884.2. NM_015069.3. [Q2M1K9-1]
XP_005255913.1. XM_005255856.3. [Q2M1K9-2]
UniGeneiHs.530930.
Hs.744482.

Genome annotation databases

EnsembliENST00000262383; ENSP00000262383; ENSG00000102935. [Q2M1K9-1]
ENST00000561648; ENSP00000455426; ENSG00000102935. [Q2M1K9-1]
ENST00000562520; ENSP00000457664; ENSG00000102935. [Q2M1K9-2]
ENST00000562871; ENSP00000457928; ENSG00000102935. [Q2M1K9-2]
ENST00000563137; ENSP00000455588; ENSG00000102935. [Q2M1K9-2]
GeneIDi23090.
KEGGihsa:23090.
UCSCiuc010vgn.3. human. [Q2M1K9-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC112315 mRNA. Translation: AAI12316.1.
BC112317 mRNA. Translation: AAI12318.1.
AF221712 mRNA. Translation: AAF28354.1.
AB018303 mRNA. Translation: BAA34480.2.
CCDSiCCDS32445.1. [Q2M1K9-1]
RefSeqiNP_001258549.1. NM_001271620.1. [Q2M1K9-2]
NP_055884.2. NM_015069.3. [Q2M1K9-1]
XP_005255913.1. XM_005255856.3. [Q2M1K9-2]
UniGeneiHs.530930.
Hs.744482.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2MDGNMR-A928-981[»]
ProteinModelPortaliQ2M1K9.
SMRiQ2M1K9. Positions 928-981.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi116718. 14 interactions.
IntActiQ2M1K9. 9 interactions.
MINTiMINT-2819859.
STRINGi9606.ENSP00000262383.

PTM databases

PhosphoSiteiQ2M1K9.

Polymorphism and mutation databases

DMDMi121941357.

Proteomic databases

PaxDbiQ2M1K9.
PRIDEiQ2M1K9.

Protocols and materials databases

DNASUi23090.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000262383; ENSP00000262383; ENSG00000102935. [Q2M1K9-1]
ENST00000561648; ENSP00000455426; ENSG00000102935. [Q2M1K9-1]
ENST00000562520; ENSP00000457664; ENSG00000102935. [Q2M1K9-2]
ENST00000562871; ENSP00000457928; ENSG00000102935. [Q2M1K9-2]
ENST00000563137; ENSP00000455588; ENSG00000102935. [Q2M1K9-2]
GeneIDi23090.
KEGGihsa:23090.
UCSCiuc010vgn.3. human. [Q2M1K9-1]

Organism-specific databases

CTDi23090.
GeneCardsiGC16M049524.
HGNCiHGNC:16762. ZNF423.
HPAiHPA015258.
MIMi604557. gene.
614844. phenotype.
neXtProtiNX_Q2M1K9.
Orphaneti2318. Joubert syndrome with oculorenal defect.
PharmGKBiPA134903681.
HUGEiSearch...
GenAtlasiSearch...

Phylogenomic databases

eggNOGiCOG5048.
GeneTreeiENSGT00790000122954.
HOGENOMiHOG000155793.
HOVERGENiHBG052773.
InParanoidiQ2M1K9.
OMAiFIEHCQM.
OrthoDBiEOG7NGQB0.
PhylomeDBiQ2M1K9.
TreeFamiTF331504.

Miscellaneous databases

ChiTaRSiZNF423. human.
GeneWikiiZNF423.
GenomeRNAii23090.
NextBioi44239.
PROiQ2M1K9.
SOURCEiSearch...

Gene expression databases

BgeeiQ2M1K9.
CleanExiHS_ZNF423.
ExpressionAtlasiQ2M1K9. baseline and differential.
GenevisibleiQ2M1K9. HS.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 4 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 30 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 27 hits.
PS50157. ZINC_FINGER_C2H2_2. 23 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  2. "OAZ uses distinct DNA- and protein-binding zinc fingers in separate BMP-Smad and Olf signaling pathways."
    Hata A., Seoane J., Lagna G., Montalvo E., Hemmati-Brivanlou A., Massague J.
    Cell 100:229-240(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 61-1284, FUNCTION, DNA-BINDING, SUBCELLULAR LOCATION, DOMAIN, TISSUE SPECIFICITY, INTERACTION WITH SMAD1 AND SMAD4, MUTAGENESIS OF ASN-420; GLU-426; THR-452; GLU-458; ASP-491; GLU-497; THR-528; GLU-534; PHE-574 AND THR-581.
  3. "Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
    Nagase T., Ishikawa K., Suyama M., Kikuno R., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
    DNA Res. 5:277-286(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 61-1284.
    Tissue: Brain.
  4. "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones."
    Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T.
    DNA Res. 9:99-106(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: SEQUENCE REVISION.
  5. "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
    Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.
    Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-47; SER-50; SER-604 AND SER-1054, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  6. "Exome capture reveals ZNF423 and CEP164 mutations, linking renal ciliopathies to DNA damage response signaling."
    Chaki M., Airik R., Ghosh A.K., Giles R.H., Chen R., Slaats G.G., Wang H., Hurd T.W., Zhou W., Cluckey A., Gee H.Y., Ramaswami G., Hong C.J., Hamilton B.A., Cervenka I., Ganji R.S., Bryja V., Arts H.H.
    , van Reeuwijk J., Oud M.M., Letteboer S.J., Roepman R., Husson H., Ibraghimov-Beskrovnaya O., Yasunaga T., Walz G., Eley L., Sayer J.A., Schermer B., Liebau M.C., Benzing T., Le Corre S., Drummond I., Janssen S., Allen S.J., Natarajan S., O'Toole J.F., Attanasio M., Saunier S., Antignac C., Koenekoop R.K., Ren H., Lopez I., Nayir A., Stoetzel C., Dollfus H., Massoudi R., Gleeson J.G., Andreoli S.P., Doherty D.G., Lindstrad A., Golzio C., Katsanis N., Pape L., Abboud E.B., Al-Rajhi A.A., Lewis R.A., Omran H., Lee E.Y., Wang S., Sekiguchi J.M., Saunders R., Johnson C.A., Garner E., Vanselow K., Andersen J.S., Shlomai J., Nurnberg G., Nurnberg P., Levy S., Smogorzewska A., Otto E.A., Hildebrandt F.
    Cell 150:533-548(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH PARP1 AND CEP290, VARIANT NPHP14 LEU-913, VARIANT JBTS19 TYR-1277.

Entry informationi

Entry nameiZN423_HUMAN
AccessioniPrimary (citable) accession number: Q2M1K9
Secondary accession number(s): O94860, Q76N04, Q9NZ13
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: February 21, 2006
Last modified: June 24, 2015
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Human chromosome 16
    Human chromosome 16: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.