SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q2LWU1

- TRUB_SYNAS

UniProt

Q2LWU1 - TRUB_SYNAS

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
tRNA pseudouridine synthase B
Gene
truB, SYNAS_26720, SYN_01783
Organism
Syntrophus aciditrophicus (strain SB)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs By similarity.UniRule annotation

Catalytic activityi

tRNA uridine(55) = tRNA pseudouridine(55).UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei38 – 381Nucleophile By similarity

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. pseudouridine synthase activity Source: UniProtKB-HAMAP
Complete GO annotation...

GO - Biological processi

  1. tRNA pseudouridine synthesis Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Biological processi

tRNA processing

Enzyme and pathway databases

BioCyciSACI56780:GHXT-2722-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase B (EC:5.4.99.25)
Alternative name(s):
tRNA pseudouridine(55) synthase
Short name:
Psi55 synthase
tRNA pseudouridylate synthase
tRNA-uridine isomerase
Gene namesi
Name:truB
Ordered Locus Names:SYNAS_26720
ORF Names:SYN_01783
OrganismiSyntrophus aciditrophicus (strain SB)
Taxonomic identifieri56780 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaSyntrophobacteralesSyntrophaceaeSyntrophus
ProteomesiUP000001933: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 312312tRNA pseudouridine synthase BUniRule annotation
PRO_1000084704Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi56780.SYN_01783.

Structurei

3D structure databases

ProteinModelPortaliQ2LWU1.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0130.
HOGENOMiHOG000231225.
KOiK03177.
OMAiYELQFIR.
OrthoDBiEOG6358D3.

Family and domain databases

HAMAPiMF_01080. TruB_bact.
InterProiIPR002501. PsdUridine_synth.
IPR020103. PsdUridine_synth_cat_dom.
IPR014780. tRNA_psdUridine_synth_TruB.
[Graphical view]
PANTHERiPTHR13767. PTHR13767. 1 hit.
PfamiPF01509. TruB_N. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00431. TruB. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2LWU1-1 [UniParc]FASTAAdd to Basket

« Hide

MDGILILDKS PGKTSQKVVQ EVKRILGVRK AGHAGTLDPL ATGVLPLCLN    50
EATKLVQFLS LDDKEYRATM LLGVTTETMD IEGRITDRRE PEVDEVRIRE 100
ALQFFTGPIS QEPPRYSAVK FKGRPLYSWA RKGVDIALPP RTVQVYSSIL 150
EEIALPYVTF RVACSKGTYI RTLCADLGER LGCGACMSVL RRLRCGCFTL 200
ETAVSLEDIA DGKGRETLLS RVIPLSDGLR NVAAIEISEE LSGRIRDGFQ 250
PDGSTLREYH IPSLADGDMV KFLTSSGGLV AVARFLYASD QLAVSDMGQP 300
AVRILRVFHD RA 312
Length:312
Mass (Da):34,305
Last modified:February 21, 2006 - v1
Checksum:i11DDAA1854061950
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000252 Genomic DNA. Translation: ABC78551.1.
RefSeqiYP_462719.1. NC_007759.1.

Genome annotation databases

EnsemblBacteriaiABC78551; ABC78551; SYN_01783.
GeneIDi3882721.
KEGGisat:SYN_01783.
PATRICi23866222. VBISynAci70500_2892.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000252 Genomic DNA. Translation: ABC78551.1 .
RefSeqi YP_462719.1. NC_007759.1.

3D structure databases

ProteinModelPortali Q2LWU1.
ModBasei Search...

Protein-protein interaction databases

STRINGi 56780.SYN_01783.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABC78551 ; ABC78551 ; SYN_01783 .
GeneIDi 3882721.
KEGGi sat:SYN_01783.
PATRICi 23866222. VBISynAci70500_2892.

Phylogenomic databases

eggNOGi COG0130.
HOGENOMi HOG000231225.
KOi K03177.
OMAi YELQFIR.
OrthoDBi EOG6358D3.

Enzyme and pathway databases

BioCyci SACI56780:GHXT-2722-MONOMER.

Family and domain databases

HAMAPi MF_01080. TruB_bact.
InterProi IPR002501. PsdUridine_synth.
IPR020103. PsdUridine_synth_cat_dom.
IPR014780. tRNA_psdUridine_synth_TruB.
[Graphical view ]
PANTHERi PTHR13767. PTHR13767. 1 hit.
Pfami PF01509. TruB_N. 1 hit.
[Graphical view ]
SUPFAMi SSF55120. SSF55120. 1 hit.
TIGRFAMsi TIGR00431. TruB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome of the syntrophic bacterium Syntrophus aciditrophicus: Life dependent on negative change in electrical potential."
    Gunsalus R., Rohlin L., Kim U., Krupp R., Bhattacharyya A., Campbell J., Mclerney M., Moutakki H., Rio-Hernandez L.
    Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SB.

Entry informationi

Entry nameiTRUB_SYNAS
AccessioniPrimary (citable) accession number: Q2LWU1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 21, 2006
Last modified: May 14, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi