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Protein

Alpha-amylase

Gene

SYN_00687

Organism
Syntrophus aciditrophicus (strain SB)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciSACI56780:GHXT-2150-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
ORF Names:SYN_00687Imported
OrganismiSyntrophus aciditrophicus (strain SB)Imported
Taxonomic identifieri56780 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaSyntrophobacteralesSyntrophaceaeSyntrophus
ProteomesiUP000001933: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi56780.SYN_00687.

Structurei

3D structure databases

ProteinModelPortaliQ2LV73.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
KOiK01176.
OMAiANHGSPS.
OrthoDBiEOG6CZQGF.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2LV73-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MIPASAMPLT QNIYKNLKPR INQPEEIMAI TRKDIIYFII TDRFYGIENQ
60 70 80 90 100
KPEVKQKINK DNPFFYHGGN FDGIIEKIPY LKNLGITALW ITPVYRQIDL
110 120 130 140 150
ETAHGYHGYW ALDFNAVNPV LYIDNGHYLP GSKYYLRDLV DRLHMNGIKL
160 170 180 190 200
ILDVVVNHTG YRHPGIFDSL DNPTPICSSW FNRMNISLET SETEGQLSGL
210 220 230 240 250
PDMDLDLPDV CDYHTETILS WLRETGVDGI RMDTVKHVER NFWTYFKTQV
260 270 280 290 300
KGQFPGVTLL GEVLVFDIDN LSQYQKYDAI DQLFDFPMQN AIKNVFVYDH
310 320 330 340 350
GMTDFISPYN IGTGILERDR SYSNHNQLVT LLDNHDLSAR FMTWILDRQA
360 370 380 390 400
GDYRKATDVM KLTLTFLFTI RGIPQIYYGT ELGLEGHSDP DNRRDFPWEK
410 420 430 440 450
LNADYEVKTE YSHEKEIYDH TRKMISIRRS NDALSSGYFV CLYVDYFLMI
460 470 480 490 500
FLRYVEDNIV IAGFHNGWLD MPSEVIIDIG HNPDLPRRIR EKLSDATLVS
510 520 530
LLDNQLHPIR EGKLKIRLGK KSAIILTIKN Q
Length:531
Mass (Da):61,722
Last modified:February 21, 2006 - v1
Checksum:i5B25DD57EC1752C8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000252 Genomic DNA. Translation: ABC77981.1.
RefSeqiYP_462149.1. NC_007759.1.

Genome annotation databases

EnsemblBacteriaiABC77981; ABC77981; SYN_00687.
GeneIDi3884191.
KEGGisat:SYN_00687.
PATRICi23864968. VBISynAci70500_2267.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000252 Genomic DNA. Translation: ABC77981.1.
RefSeqiYP_462149.1. NC_007759.1.

3D structure databases

ProteinModelPortaliQ2LV73.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi56780.SYN_00687.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC77981; ABC77981; SYN_00687.
GeneIDi3884191.
KEGGisat:SYN_00687.
PATRICi23864968. VBISynAci70500_2267.

Phylogenomic databases

eggNOGiCOG0366.
KOiK01176.
OMAiANHGSPS.
OrthoDBiEOG6CZQGF.

Enzyme and pathway databases

BioCyciSACI56780:GHXT-2150-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The genome of the syntrophic bacterium Syntrophus aciditrophicus: Life dependent on negative change in electrical potential."
    Gunsalus R., Rohlin L., Kim U., Krupp R., Bhattacharyya A., Campbell J., Mclerney M., Moutakki H., Rio-Hernandez L.
    Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SBImported.

Entry informationi

Entry nameiQ2LV73_SYNAS
AccessioniPrimary (citable) accession number: Q2LV73
Entry historyi
Integrated into UniProtKB/TrEMBL: February 21, 2006
Last sequence update: February 21, 2006
Last modified: January 7, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.