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Protein
Submitted name:

Alpha-amylase

Gene

SYN_02854

Organism
Syntrophus aciditrophicus (strain SB)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciSACI56780:GHXT-1345-MONOMER.

Protein family/group databases

CAZyiGH57. Glycoside Hydrolase Family 57.
GT5. Glycosyltransferase Family 5.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
ORF Names:SYN_02854Imported
OrganismiSyntrophus aciditrophicus (strain SB)Imported
Taxonomic identifieri56780 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaSyntrophobacteralesSyntrophaceaeSyntrophus
ProteomesiUP000001933 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi56780.SYN_02854.

Structurei

3D structure databases

ProteinModelPortaliQ2LSY2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 57 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1449.
KOiK01176.
OrthoDBiEOG6JTC6Z.

Family and domain databases

Gene3Di3.20.110.10. 2 hits.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR027291. Glyco_hydro_38/57_N.
IPR004300. Glyco_hydro_57_N.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamiPF03065. Glyco_hydro_57. 1 hit.
PF08323. Glyco_transf_5. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2LSY2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSVIFYFQL HQPLRLHPDR DKFLWDEENR EIFLKASERS YIPAIGMFTD
60 70 80 90 100
LIRNHPGFRI TLSMSGTFLE QAQTYHPSLI QALRSLLDAG KESQQVEFLC
110 120 130 140 150
ETYYHSLASL FNDPHKQEFR DQVSLHREAI RKLFGIFPLS FRNTELIYNN
160 170 180 190 200
SIADIVADMG YVSILCEPRE NSHMGAGTGS ISPNSVFRAR GTHLVVIPRN
210 220 230 240 250
IALSNDVAFR FSSHPLTPEE YAASIARGDG EVILLGYDLE HIGGHIREEK
260 270 280 290 300
GIFDFWRGLP AALEQYPDLL VETPTSVATR FKDAPLPSLD ISGLSTSSWL
310 320 330 340 350
DVIRNTFGWL ESAAQFELFK DMEGMEGVAR RAGGELLTRW RNLTASDHIY
360 370 380 390 400
YLKDRSMDEH VLCRYENPYE RSTIRATQIL TRKIDYLEMF IKRFEILKRT
410 420 430 440 450
EKTPILLITP ETGRLPFDMG MLAKYISGKS GGQGEVVSAL CEGLLERGID
460 470 480 490 500
VHLATLNLKK RFQMESQMTE SQWREIRYKI DPENIHLVSS AIFADNLSAY
510 520 530 540 550
SGDPLRTAAE FQREIVNNIL KIVRSKHEGR LIIHSHDWMA GGAITAYAKL
560 570 580 590 600
TDVPVLHTVH NVFTENLPLD LLSGINLSGI SDYLYYSEAY GQPCIDCQAT
610 620 630 640 650
AIKNATIINF VGKQFLREVV EDYFLDRPLV PLSVRNEVKA KYFNDAARAI
660 670 680 690 700
INAPASSMYP ENCPFLIRKY GLDDPILQAK RENLVAFQQR TGLNVNPDAI
710 720 730 740 750
LFYWPSRLDP VQKGIELLEA IAQKFVTAYP DAQIAIVGDG IGSDRTHVEI
760 770 780 790 800
FGRIAYGSEG KIAYHRFDEA LSMLGFAAAN DVFGASLYEP CGQIDQVGNL
810 820 830 840 850
FGATATNRDT GGYHDKITEL RLKMDGAPQD VGNGFLFRDY DPGGLWYGLE
860 870 880 890 900
KSIKFHRKPP AVREAQIRRI MRQCREKYDL QTMIAQYIRI YEKLNGGKPL

G
Length:901
Mass (Da):102,042
Last modified:February 21, 2006 - v1
Checksum:i720CF39EE76E553B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000252 Genomic DNA. Translation: ABC77194.1.
RefSeqiWP_011417223.1. NC_007759.1.
YP_461362.1. NC_007759.1.

Genome annotation databases

EnsemblBacteriaiABC77194; ABC77194; SYN_02854.
KEGGisat:SYN_02854.
PATRICi23863239. VBISynAci70500_1421.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000252 Genomic DNA. Translation: ABC77194.1.
RefSeqiWP_011417223.1. NC_007759.1.
YP_461362.1. NC_007759.1.

3D structure databases

ProteinModelPortaliQ2LSY2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi56780.SYN_02854.

Protein family/group databases

CAZyiGH57. Glycoside Hydrolase Family 57.
GT5. Glycosyltransferase Family 5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC77194; ABC77194; SYN_02854.
KEGGisat:SYN_02854.
PATRICi23863239. VBISynAci70500_1421.

Phylogenomic databases

eggNOGiCOG1449.
KOiK01176.
OrthoDBiEOG6JTC6Z.

Enzyme and pathway databases

BioCyciSACI56780:GHXT-1345-MONOMER.

Family and domain databases

Gene3Di3.20.110.10. 2 hits.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR027291. Glyco_hydro_38/57_N.
IPR004300. Glyco_hydro_57_N.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamiPF03065. Glyco_hydro_57. 1 hit.
PF08323. Glyco_transf_5. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The genome of the syntrophic bacterium Syntrophus aciditrophicus: Life dependent on negative change in electrical potential."
    Gunsalus R., Rohlin L., Kim U., Krupp R., Bhattacharyya A., Campbell J., Mclerney M., Moutakki H., Rio-Hernandez L.
    Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SBImported.

Entry informationi

Entry nameiQ2LSY2_SYNAS
AccessioniPrimary (citable) accession number: Q2LSY2
Entry historyi
Integrated into UniProtKB/TrEMBL: February 21, 2006
Last sequence update: February 21, 2006
Last modified: May 27, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.