Q2KVN4 (Q2KVN4_BORA1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative alginate lyase EMBL CAJ50449.1
EC=4.2.2.3 EMBL CAJ50449.1

Gene names

Ordered Locus Names:

BAV2839

Organism

Bordetella avium (strain 197N) [Complete proteome] [HAMAP]

Taxonomic identifier

360910 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella

Protein attributes

Sequence length	333 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL CAJ50449.1
Molecular function	Lyase EMBL CAJ50449.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alginic acid catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	periplasmic space Inferred from electronic annotation. Source: InterPro
Molecular function	poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 36	36	Potential EMBL CAJ50449.1
	Chain	37 – 333	297	Potential EMBL CAJ50449.1		PRO_5000077484

Sequences

	Sequence		Length	Mass (Da)
	Q2KVN4 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: C3E3B46AFA9BA80B	FASTA	333	37,481
	10 20 30 40 50 60 MHRSSSRGRS CVFRRLAAWA VLGIATVSAT LVFAAECETP PPAERNIRVM GYYRDAASSV 70 80 90 100 110 120 IDPALKAENK AATRPFRRFV GGLATMSDAY IGRHDEGAAR CALSWLDAWA DGGAMLGQMI 130 140 150 160 170 180 RVNNDQSEYV RQWTLGAAGI AYLKTRRAAT PDQRKVIQAW LKQLARATLV YWESPKHKRN 190 200 210 220 230 240 NHYYWTGLGV LAAALATHDQ GLLDSARSIY QQGIDDIQAD GSLPMEMARK HRALHYHDYA 250 260 270 280 290 300 IAPLVMMAEL ARLEGQDWYA YRPQALERLA ERVAAGYQDP FWFNQQAGVR QEPARPSGSS 310 320 330 GWVEFYRLRS PHPARFETLH EQGPFRDPWM GET

References

[1]

"Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction." Sebaihia M., Preston A., Maskell D.J., Kuzmiak H., Connell T.D., King N.D., Orndorff P.E., Miyamoto D.M., Thomson N.R., Harris D., Goble A., Lord A., Murphy L., Quail M.A., Rutter S., Squares R., Squares S., Woodward J., Parkhill J., Temple L.M. J. Bacteriol. 188:6002-6015(2006) [PubMed: 16885469] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM167904 Genomic DNA. Translation: CAJ50449.1.
RefSeq	YP_787335.1. NC_010645.1.
3D structure databases
ProteinModelPortal	Q2KVN4.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2KVN4.
Protein family/group databases
CAZy	PL5. Polysaccharide Lyase Family 5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6266232.
GenomeReviews	Gene locus BAV2839 in contig AM167904_GR.
KEGG	bav:BAV2839.
NMPDR	fig|521.1.peg.2481.
PATRIC	21131969. VBIBorAvi43433_2872.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG701480.
OMA	AAWSVMA.
ProtClustDB	PRK00325.
Family and domain databases
InterPro	IPR008397. Alginate_lyase_dom. IPR008929. Chondroitin_lyas. [Graphical view]
Gene3D	G3DSA:1.50.10.110. Alginate_lyase. 1 hit.
KO	K01729.
Pfam	PF05426. Alginate_lyase. 1 hit. [Graphical view]
SUPFAM	SSF48230. Chondroitin_lyas. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q2KVN4_BORA1

Accession

Primary (citable) accession number: Q2KVN4

Entry history

Integrated into UniProtKB/TrEMBL:	March 7, 2006
Last sequence update:	March 7, 2006
Last modified:	December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)