Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Trafficking protein particle complex subunit 1

Gene

Trappc1

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in vesicular transport from endoplasmic reticulum to Golgi.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

ER-Golgi transport, Transport

Enzyme and pathway databases

ReactomeiR-RNO-204005. COPII (Coat Protein 2) Mediated Vesicle Transport.

Names & Taxonomyi

Protein namesi
Recommended name:
Trafficking protein particle complex subunit 1
Gene namesi
Name:Trappc1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1311365. Trappc1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum, Golgi apparatus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 145145Trafficking protein particle complex subunit 1PRO_0000330742Add
BLAST

Proteomic databases

PaxDbiQ2KMM2.
PRIDEiQ2KMM2.

Expressioni

Gene expression databases

BgeeiENSRNOG00000037627.
GenevisibleiQ2KMM2. RN.

Interactioni

Subunit structurei

Part of the multisubunit TRAPP (transport protein particle) complex.By similarity

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000053911.

Structurei

3D structure databases

ProteinModelPortaliQ2KMM2.
SMRiQ2KMM2. Positions 2-142.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3368. Eukaryota.
ENOG4111X41. LUCA.
GeneTreeiENSGT00510000047863.
HOGENOMiHOG000172118.
HOVERGENiHBG056032.
InParanoidiQ2KMM2.
KOiK20300.
OMAiFYETPAN.
OrthoDBiEOG091G0RVD.
PhylomeDBiQ2KMM2.
TreeFamiTF323681.

Family and domain databases

InterProiIPR011012. Longin-like_dom.
IPR007233. TRAPPC.
[Graphical view]
PANTHERiPTHR23249. PTHR23249. 1 hit.
PfamiPF04099. Sybindin. 1 hit.
[Graphical view]
SMARTiSM01399. Sybindin. 1 hit.
[Graphical view]
SUPFAMiSSF64356. SSF64356. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2KMM2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVHNLYLFD RNGVCLHYSE WHRKKQAGIP KEEEYKLMYG MLFSIRSFVS
60 70 80 90 100
KMSPLDMKDG FLSFQTSRYK LHYYETPTGI KVVMNTDLGV GPIRDVLHHI
110 120 130 140
YSALYVEFVV KNPLCPLGQT VQSELFRSRL DSYVRSLPFF SARAG
Length:145
Mass (Da):16,882
Last modified:March 7, 2006 - v1
Checksum:i7C8C9FCC1118CDC7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY903234 mRNA. Translation: AAX85364.1.
AY903235 mRNA. Translation: AAX85365.1.
AY903236 mRNA. Translation: AAX85366.1.
AY903237 mRNA. Translation: AAX85367.1.
AY903238 mRNA. Translation: AAX85368.1.
RefSeqiNP_001034467.1. NM_001039378.1.
UniGeneiRn.2918.

Genome annotation databases

EnsembliENSRNOT00000057079; ENSRNOP00000053911; ENSRNOG00000037627.
ENSRNOT00000087003; ENSRNOP00000075251; ENSRNOG00000037627.
GeneIDi287427.
KEGGirno:287427.
UCSCiRGD:1311365. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY903234 mRNA. Translation: AAX85364.1.
AY903235 mRNA. Translation: AAX85365.1.
AY903236 mRNA. Translation: AAX85366.1.
AY903237 mRNA. Translation: AAX85367.1.
AY903238 mRNA. Translation: AAX85368.1.
RefSeqiNP_001034467.1. NM_001039378.1.
UniGeneiRn.2918.

3D structure databases

ProteinModelPortaliQ2KMM2.
SMRiQ2KMM2. Positions 2-142.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000053911.

Proteomic databases

PaxDbiQ2KMM2.
PRIDEiQ2KMM2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000057079; ENSRNOP00000053911; ENSRNOG00000037627.
ENSRNOT00000087003; ENSRNOP00000075251; ENSRNOG00000037627.
GeneIDi287427.
KEGGirno:287427.
UCSCiRGD:1311365. rat.

Organism-specific databases

CTDi58485.
RGDi1311365. Trappc1.

Phylogenomic databases

eggNOGiKOG3368. Eukaryota.
ENOG4111X41. LUCA.
GeneTreeiENSGT00510000047863.
HOGENOMiHOG000172118.
HOVERGENiHBG056032.
InParanoidiQ2KMM2.
KOiK20300.
OMAiFYETPAN.
OrthoDBiEOG091G0RVD.
PhylomeDBiQ2KMM2.
TreeFamiTF323681.

Enzyme and pathway databases

ReactomeiR-RNO-204005. COPII (Coat Protein 2) Mediated Vesicle Transport.

Miscellaneous databases

PROiQ2KMM2.

Gene expression databases

BgeeiENSRNOG00000037627.
GenevisibleiQ2KMM2. RN.

Family and domain databases

InterProiIPR011012. Longin-like_dom.
IPR007233. TRAPPC.
[Graphical view]
PANTHERiPTHR23249. PTHR23249. 1 hit.
PfamiPF04099. Sybindin. 1 hit.
[Graphical view]
SMARTiSM01399. Sybindin. 1 hit.
[Graphical view]
SUPFAMiSSF64356. SSF64356. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiTPPC1_RAT
AccessioniPrimary (citable) accession number: Q2KMM2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: March 7, 2006
Last modified: September 7, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.