Q2KDR9 (Q2KDR9_RHIEC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-deoxyribose-5-phosphate aldolase protein EMBL ABC89017.1
EC=4.1.2.4 EMBL ABC89017.1

Gene names

Name:	deoC EMBL ABC89017.1
Ordered Locus Names:	RHE_CH00193

Organism

Rhizobium etli (strain CFN 42 / ATCC 51251) [Complete proteome] [HAMAP]

Taxonomic identifier

347834 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	258 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS011343
Catalytic activity	2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS011343
Pathway	Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS011343

Ontologies

Keywords
Ligand	Schiff base SAAS SAAS011343
Molecular function	Lyase SAAS SAAS011343 EMBL ABC89017.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	deoxyribonucleotide catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q2KDR9 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: 15CFE4A13F2787E9	FASTA	258	26,917
	10 20 30 40 50 60 MNSHSIRETA AVALSLLDLT NLKDDCTEAQ IDTLCVRAQT PYGNSAAICI WPRFVAYARN 70 80 90 100 110 120 ILGAGHPVRI ATVVNFPAGD MEVADVAAET REAIADGADE IDLVIPYRKL ISGNEKAVTD 130 140 150 160 170 180 MVKAVRAECA GPVLLKVIIE TGELKDAALI RRASELAIGA GADFIKTSTG KVAVNATLEA 190 200 210 220 230 240 ADIMIRAIRE SGRKVGFKPA GGIGSVADAA LYLSLAETIM APDWAMPSTF RFGASGLLDD 250 ILAVLSGAQP AAAAASSY

References

[1]

"The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons." Gonzalez V., Santamaria R.I., Bustos P., Hernandez-Gonzalez I., Medrano-Soto A., Moreno-Hagelsieb G., Janga S.C., Ramirez M.A., Jimenez-Jacinto V., Collado-Vides J., Davila G. Proc. Natl. Acad. Sci. U.S.A. 103:3834-3839(2006) [PubMed: 16505379] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000133 Genomic DNA. Translation: ABC89017.1.
RefSeq	YP_467744.1. NC_007761.1.
3D structure databases
ProteinModelPortal	Q2KDR9.
SMR	Q2KDR9. Positions 8-246.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2KDR9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3890893.
GenomeReviews	Gene locus RHE_CH00193 in contig CP000133_GR.
KEGG	ret:RHE_CH00193.
PATRIC	23081678. VBIRhiEtl108884_0524.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0274.
HOGENOM	HBG636421.
OMA	FELVKQC.
PhylomeDB	Q2KDR9.
ProtClustDB	PRK05283.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/AroFGH_arch. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01619.
PANTHER	PTHR10889. DeoC. 1 hit.
Pfam	PF01791. DeoC. 1 hit. [Graphical view]
PIRSF	PIRSF001357. DeoC. 1 hit.
TIGRFAMs	TIGR00126. DeoC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q2KDR9_RHIEC

Accession

Primary (citable) accession number: Q2KDR9

Entry history

Integrated into UniProtKB/TrEMBL:	March 7, 2006
Last sequence update:	March 7, 2006
Last modified:	December 14, 2011
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)