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Q2KDJ1

- Q2KDJ1_RHIEC

UniProt

Q2KDJ1 - Q2KDJ1_RHIEC

Protein
Submitted name:

Probable oxidoreductase protein

Gene

RHE_CH00272

Organism
Rhizobium etli (strain CFN 42 / ATCC 51251)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 51 (01 Oct 2014)
      Sequence version 1 (07 Mar 2006)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi21 – 211Sodium; via carbonyl oxygenImported
    Metal bindingi22 – 221SodiumImported
    Metal bindingi24 – 241Sodium; via carbonyl oxygenImported
    Metal bindingi27 – 271Sodium; via carbonyl oxygenImported
    Metal bindingi46 – 461Sodium; via carbonyl oxygenImported

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. oxidoreductase activity Source: InterPro

    Enzyme and pathway databases

    BioCyciRETL347834:GJJ0-274-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Probable oxidoreductase proteinImported
    Gene namesi
    Ordered Locus Names:RHE_CH00272Imported
    OrganismiRhizobium etli (strain CFN 42 / ATCC 51251)Imported
    Taxonomic identifieri347834 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
    ProteomesiUP000001936: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi347834.RHE_CH00272.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4HADX-ray2.00A/B/C/D1-328[»]
    ProteinModelPortaliQ2KDJ1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0673.
    OMAiTAKIGRD.
    OrthoDBiEOG65F90G.

    Family and domain databases

    Gene3Di3.40.50.720. 1 hit.
    InterProiIPR016040. NAD(P)-bd_dom.
    IPR000683. Oxidoreductase_N.
    IPR004104. OxRdtase_C.
    [Graphical view]
    PfamiPF01408. GFO_IDH_MocA. 1 hit.
    PF02894. GFO_IDH_MocA_C. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q2KDJ1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLRFGIISTA KIGRDNVVPA IQDAENCVVT AIASRDLTRA REMADRFSVP    50
    HAFGSYEEML ASDVIDAVYI PLPTSQHIEW SIKAADAGKH VVCEKPLALK 100
    AGDIDAVIAA RDRNKVVVTE AYMITYSPVW QKVRSLIDEG AIGSLRHVQG 150
    AFTYFNRDAS NMRNIPELGG GGLPDIGVYP VMSTRFSTGK EPLRIQANTE 200
    RDPDFGTDIY SSVKADFDDF ELSFYVSTQM ANRQIMVFHG TNGYIEVKSP 250
    FNANRWGPEE IELADRSHNE SRIFRFQDSR QYRREVEAFA RAVENGKEEV 300
    VTLENSKLNQ KVIDAIYRAS EKDGWEAV 328
    Length:328
    Mass (Da):36,767
    Last modified:March 7, 2006 - v1
    Checksum:iAD102DCC4045DE13
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000133 Genomic DNA. Translation: ABC89095.1.
    RefSeqiWP_011423657.1. NC_007761.1.
    YP_467822.1. NC_007761.1.

    Genome annotation databases

    EnsemblBacteriaiABC89095; ABC89095; RHE_CH00272.
    GeneIDi3890990.
    KEGGiret:RHE_CH00272.
    PATRICi23081834. VBIRhiEtl108884_0601.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000133 Genomic DNA. Translation: ABC89095.1 .
    RefSeqi WP_011423657.1. NC_007761.1.
    YP_467822.1. NC_007761.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4HAD X-ray 2.00 A/B/C/D 1-328 [» ]
    ProteinModelPortali Q2KDJ1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 347834.RHE_CH00272.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABC89095 ; ABC89095 ; RHE_CH00272 .
    GeneIDi 3890990.
    KEGGi ret:RHE_CH00272.
    PATRICi 23081834. VBIRhiEtl108884_0601.

    Phylogenomic databases

    eggNOGi COG0673.
    OMAi TAKIGRD.
    OrthoDBi EOG65F90G.

    Enzyme and pathway databases

    BioCyci RETL347834:GJJ0-274-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.720. 1 hit.
    InterProi IPR016040. NAD(P)-bd_dom.
    IPR000683. Oxidoreductase_N.
    IPR004104. OxRdtase_C.
    [Graphical view ]
    Pfami PF01408. GFO_IDH_MocA. 1 hit.
    PF02894. GFO_IDH_MocA_C. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CFN 42 / ATCC 51251Imported.
    2. "Crystal structure of probable oxidoreductase protein from Rhizobium etli CFN 42."
      Malashkevich V.N., Bhosle R., Toro R., Hillerich B., Gizzi A., Garforth S., Kar A., Chan M.K., Lafluer J., Patel H., Matikainen B., Chamala S., Lim S., Celikgil A., Villegas G., Evans B., Zenchek W., Love J.
      , Fiser A., Khafizov K., Seidel R., Bonanno J.B., Almo S.C.
      Submitted (SEP-2012) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS).

    Entry informationi

    Entry nameiQ2KDJ1_RHIEC
    AccessioniPrimary (citable) accession number: Q2KDJ1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 7, 2006
    Last sequence update: March 7, 2006
    Last modified: October 1, 2014
    This is version 51 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3