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Q2KDJ1

- Q2KDJ1_RHIEC

UniProt

Q2KDJ1 - Q2KDJ1_RHIEC

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Protein
Submitted name:

Probable oxidoreductase protein

Gene

RHE_CH00272

Organism
Rhizobium etli (strain CFN 42 / ATCC 51251)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi21 – 211Sodium; via carbonyl oxygenImported
Metal bindingi22 – 221SodiumImported
Metal bindingi24 – 241Sodium; via carbonyl oxygenImported
Metal bindingi27 – 271Sodium; via carbonyl oxygenImported
Metal bindingi46 – 461Sodium; via carbonyl oxygenImported

GO - Molecular functioni

  1. oxidoreductase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciRETL347834:GJJ0-274-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable oxidoreductase proteinImported
Gene namesi
Ordered Locus Names:RHE_CH00272Imported
OrganismiRhizobium etli (strain CFN 42 / ATCC 51251)Imported
Taxonomic identifieri347834 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000001936: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi347834.RHE_CH00272.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HADX-ray2.00A/B/C/D1-328[»]
ProteinModelPortaliQ2KDJ1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0673.
OMAiTAKIGRD.
OrthoDBiEOG65F90G.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
IPR004104. OxRdtase_C.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
PF02894. GFO_IDH_MocA_C. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2KDJ1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLRFGIISTA KIGRDNVVPA IQDAENCVVT AIASRDLTRA REMADRFSVP
60 70 80 90 100
HAFGSYEEML ASDVIDAVYI PLPTSQHIEW SIKAADAGKH VVCEKPLALK
110 120 130 140 150
AGDIDAVIAA RDRNKVVVTE AYMITYSPVW QKVRSLIDEG AIGSLRHVQG
160 170 180 190 200
AFTYFNRDAS NMRNIPELGG GGLPDIGVYP VMSTRFSTGK EPLRIQANTE
210 220 230 240 250
RDPDFGTDIY SSVKADFDDF ELSFYVSTQM ANRQIMVFHG TNGYIEVKSP
260 270 280 290 300
FNANRWGPEE IELADRSHNE SRIFRFQDSR QYRREVEAFA RAVENGKEEV
310 320
VTLENSKLNQ KVIDAIYRAS EKDGWEAV
Length:328
Mass (Da):36,767
Last modified:March 7, 2006 - v1
Checksum:iAD102DCC4045DE13
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000133 Genomic DNA. Translation: ABC89095.1.
RefSeqiWP_011423657.1. NC_007761.1.
YP_467822.1. NC_007761.1.

Genome annotation databases

EnsemblBacteriaiABC89095; ABC89095; RHE_CH00272.
GeneIDi3890990.
KEGGiret:RHE_CH00272.
PATRICi23081834. VBIRhiEtl108884_0601.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000133 Genomic DNA. Translation: ABC89095.1 .
RefSeqi WP_011423657.1. NC_007761.1.
YP_467822.1. NC_007761.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4HAD X-ray 2.00 A/B/C/D 1-328 [» ]
ProteinModelPortali Q2KDJ1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 347834.RHE_CH00272.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABC89095 ; ABC89095 ; RHE_CH00272 .
GeneIDi 3890990.
KEGGi ret:RHE_CH00272.
PATRICi 23081834. VBIRhiEtl108884_0601.

Phylogenomic databases

eggNOGi COG0673.
OMAi TAKIGRD.
OrthoDBi EOG65F90G.

Enzyme and pathway databases

BioCyci RETL347834:GJJ0-274-MONOMER.

Family and domain databases

Gene3Di 3.40.50.720. 1 hit.
InterProi IPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
IPR004104. OxRdtase_C.
[Graphical view ]
Pfami PF01408. GFO_IDH_MocA. 1 hit.
PF02894. GFO_IDH_MocA_C. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CFN 42 / ATCC 51251Imported.
  2. "Crystal structure of probable oxidoreductase protein from Rhizobium etli CFN 42."
    Malashkevich V.N., Bhosle R., Toro R., Hillerich B., Gizzi A., Garforth S., Kar A., Chan M.K., Lafluer J., Patel H., Matikainen B., Chamala S., Lim S., Celikgil A., Villegas G., Evans B., Zenchek W., Love J.
    , Fiser A., Khafizov K., Seidel R., Bonanno J.B., Almo S.C.
    Submitted (SEP-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS).

Entry informationi

Entry nameiQ2KDJ1_RHIEC
AccessioniPrimary (citable) accession number: Q2KDJ1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: October 29, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3