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Q2KDJ1 (Q2KDJ1_RHIEC) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:RHE_CH00272 EMBL ABC89095.1
OrganismRhizobium etli (strain CFN 42 / ATCC 51251) [Complete proteome] [HAMAP] EMBL ABC89095.1
Taxonomic identifier347834 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Protein attributes

Sequence length328 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding211Sodium; via carbonyl oxygen PDB 4HAD
Metal binding221Sodium PDB 4HAD
Metal binding241Sodium; via carbonyl oxygen PDB 4HAD
Metal binding271Sodium; via carbonyl oxygen PDB 4HAD
Metal binding461Sodium; via carbonyl oxygen PDB 4HAD

Sequences

Sequence LengthMass (Da)Tools
Q2KDJ1 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: AD102DCC4045DE13

FASTA32836,767
        10         20         30         40         50         60 
MLRFGIISTA KIGRDNVVPA IQDAENCVVT AIASRDLTRA REMADRFSVP HAFGSYEEML 

        70         80         90        100        110        120 
ASDVIDAVYI PLPTSQHIEW SIKAADAGKH VVCEKPLALK AGDIDAVIAA RDRNKVVVTE 

       130        140        150        160        170        180 
AYMITYSPVW QKVRSLIDEG AIGSLRHVQG AFTYFNRDAS NMRNIPELGG GGLPDIGVYP 

       190        200        210        220        230        240 
VMSTRFSTGK EPLRIQANTE RDPDFGTDIY SSVKADFDDF ELSFYVSTQM ANRQIMVFHG 

       250        260        270        280        290        300 
TNGYIEVKSP FNANRWGPEE IELADRSHNE SRIFRFQDSR QYRREVEAFA RAVENGKEEV 

       310        320 
VTLENSKLNQ KVIDAIYRAS EKDGWEAV 

« Hide

References

« Hide 'large scale' references
[1]"The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons."
Gonzalez V., Santamaria R.I., Bustos P., Hernandez-Gonzalez I., Medrano-Soto A., Moreno-Hagelsieb G., Janga S.C., Ramirez M.A., Jimenez-Jacinto V., Collado-Vides J., Davila G.
Proc. Natl. Acad. Sci. U.S.A. 103:3834-3839(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CFN 42 / ATCC 51251.
[2]"Crystal structure of probable oxidoreductase protein from Rhizobium etli CFN 42."
Malashkevich V.N., Bhosle R., Toro R., Hillerich B., Gizzi A., Garforth S., Kar A., Chan M.K., Lafluer J., Patel H., Matikainen B., Chamala S., Lim S., Celikgil A., Villegas G., Evans B., Zenchek W., Love J. expand/collapse author list , Fiser A., Khafizov K., Seidel R., Bonanno J.B., Almo S.C.
Submitted (SEP-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) IN COMPLEX WITH SODIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000133 Genomic DNA. Translation: ABC89095.1.
RefSeqYP_467822.1. NC_007761.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4HADX-ray2.00A/B/C/D1-328[»]
ProteinModelPortalQ2KDJ1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING347834.RHE_CH00272.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABC89095; ABC89095; RHE_CH00272.
GeneID3890990.
KEGGret:RHE_CH00272.
PATRIC23081834. VBIRhiEtl108884_0601.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0673.
OMATAKIGRD.
OrthoDBEOG65F90G.

Enzyme and pathway databases

BioCycRETL347834:GJJ0-274-MONOMER.

Family and domain databases

Gene3D3.40.50.720. 1 hit.
InterProIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
IPR004104. OxRdtase_C.
[Graphical view]
PfamPF01408. GFO_IDH_MocA. 1 hit.
PF02894. GFO_IDH_MocA_C. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2KDJ1_RHIEC
AccessionPrimary (citable) accession number: Q2KDJ1
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: June 11, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)