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Q2KCK3 (Q2KCK3_RHIEC) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative DNA ligase protein EMBL ABC89433.1
Gene names
Ordered Locus Names:RHE_CH00617 EMBL ABC89433.1
OrganismRhizobium etli (strain CFN 42 / ATCC 51251) [Complete proteome] [HAMAP] EMBL ABC89433.1
Taxonomic identifier347834 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium ›

Protein attributes

Sequence length659 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABC89433.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q2KCK3 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: F83279998556C209

FASTA65973,726
        10         20         30         40         50         60 
MALETCQAKR NFKLAPKSKD GKAVAAKRPA AKARSPAPRE RDWPKGARKG AMPDFIEPAL 

        70         80         90        100        110        120 
AKLKPKPPAG DRWIHEIKFD GYRLQVRVEN GKIRMLTRSG LDWTEKFGRE VLEAFAALPV 

       130        140        150        160        170        180 
QSAAIDGEIV VERDTGASNF SALQHDLSEG RNDRFVFYAF DLLHFDGYNL VDVALIDRKQ 

       190        200        210        220        230        240 
LLESLLPDDN DKLRYSAHFN ESGGLVLDHA CRLSLEGMIS KLRDSKYRSG RKGDWIKSKC 

       250        260        270        280        290        300 
SHRQEFVIGG YVPSTSMKNA IGSLAVGYYQ GGELKYVGRV GTGYTAATAQ MLYEKLSRLT 

       310        320        330        340        350        360 
QNENSFDDKL TSEERRGLIY VKPQLVGEVE FRAWSADGNL RHAAFRGLRE DKPAKDVTRE 

       370        380        390        400        410        420 
MEKTTAPLLP KSAVTLTHPD RIYWPDEGVT KEGLANYYAQ VWRFMAPYVV NRPLALLRLP 

       430        440        450        460        470        480 
DGINGRQRFF QKHAWKGMNP HIEEITDPKD KQGEKLLRIT DFDGIVALVQ SAVLEIHPWG 

       490        500        510        520        530        540 
ASTDNWEKPD MITMDLDPDD EVAWADVIAA AYELKERLEA EGLAAFVKTS GGKGLHVVTP 

       550        560        570        580        590        600 
LTPKAGWAEV KGFAKWLADS MSADRPDRYL ATATKAKRTG RIFIDYLRNG RGNTAVAPYS 

       610        620        630        640        650 
ARARPGAAVS MPLEWSELTI EVGPAYFTVD NAPTRLDALP RDPWDGFFAA AKPLEKKKR

« Hide

References

[1]"The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons."
Gonzalez V., Santamaria R.I., Bustos P., Hernandez-Gonzalez I., Medrano-Soto A., Moreno-Hagelsieb G., Janga S.C., Ramirez M.A., Jimenez-Jacinto V., Collado-Vides J., Davila G.
Proc. Natl. Acad. Sci. U.S.A. 103:3834-3839(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CFN 42 / ATCC 51251.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000133 Genomic DNA. Translation: ABC89433.1.
RefSeqYP_468160.1. NC_007761.1.

3D structure databases

ProteinModelPortalQ2KCK3.
ModBaseSearch...

Protein-protein interaction databases

STRING347834.RHE_CH00617.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABC89433; ABC89433; RHE_CH00617.
GeneID3892739.
KEGGret:RHE_CH00617.
PATRIC23082546. VBIRhiEtl108884_0952.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
KOK01971.
OMAWHLVRSG.

Enzyme and pathway databases

BioCycRETL347834:GJJ0-623-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2KCK3_RHIEC
AccessionPrimary (citable) accession number: Q2KCK3
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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