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Protein
Submitted name:

Probable DNA ligase (ATP) protein

Gene

RHE_CH01164

Organism
Rhizobium etli (strain CFN 42 / ATCC 51251)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRETL347834:GJJ0-1173-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable DNA ligase (ATP) proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:RHE_CH01164Imported
OrganismiRhizobium etli (strain CFN 42 / ATCC 51251)Imported
Taxonomic identifieri347834 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000001936 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi347834.RHE_CH01164.

Structurei

3D structure databases

ProteinModelPortaliQ2KB17.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2KB17-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR
60 70 80 90 100
NVKPAMLREL VLERMDEVLF HYSYDYVGDL AETISLVWDN ERDIDRSALA
110 120 130 140 150
QPRLGEVVTR MNGLGRTEVR GYVRDLLDRL DSSGRFAFIK LATGALRIGV
160 170 180 190 200
SARLAKQALA DLGGKDVAEI ETLWHGLQPP YETLFQWLAG GGDKPALASP
210 220 230 240 250
AIFHSVMLAN AVEEGDLTGL DPADYAAEWK WDGIRVQLSR SGDRRKIYSR
260 270 280 290 300
SGDDISGAFP DILEAINFSG VVDGELLVGG TARSNSPTRT FSDLQQRLNR
310 320 330 340 350
KTVTAKMLDD YPAFIRAYDM LFDGEEDIRG RNYVDRRERL SDIIDRAPHD
360 370 380 390 400
RFDLSPLVPF SSWEELDALR AAPPDPVIEG VMIKRRDSIY QAGRMKGPWF
410 420 430 440 450
KWKRNPYNVD AVLMYAQRGH GKRSSYYSDF TFGVWADDED GEQLVPVGKA
460 470 480 490 500
YFGFTDAELE LLDKFVRNNT TERFGPVRAV RADRDFGFVV EVAFEGINRS
510 520 530 540
TRHKSGVAMR FPRIARLRPD KPPYEADRLR TLIAMIDAKP G
Length:541
Mass (Da):60,974
Last modified:March 7, 2006 - v1
Checksum:i363C43532BA8534F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000133 Genomic DNA. Translation: ABC89969.1.
RefSeqiWP_011424503.1. NC_007761.1.

Genome annotation databases

EnsemblBacteriaiABC89969; ABC89969; RHE_CH01164.
GeneIDi24298833.
KEGGiret:RHE_CH01164.
PATRICi23083689. VBIRhiEtl108884_1518.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000133 Genomic DNA. Translation: ABC89969.1.
RefSeqiWP_011424503.1. NC_007761.1.

3D structure databases

ProteinModelPortaliQ2KB17.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi347834.RHE_CH01164.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC89969; ABC89969; RHE_CH01164.
GeneIDi24298833.
KEGGiret:RHE_CH01164.
PATRICi23083689. VBIRhiEtl108884_1518.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciRETL347834:GJJ0-1173-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CFN 42 / ATCC 51251Imported.

Entry informationi

Entry nameiQ2KB17_RHIEC
AccessioniPrimary (citable) accession number: Q2KB17
Entry historyi
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: July 22, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.