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Q2KB17

- Q2KB17_RHIEC

UniProt

Q2KB17 - Q2KB17_RHIEC

Protein
Submitted name:

Probable DNA ligase (ATP) protein

Gene

RHE_CH01164

Organism
Rhizobium etli (strain CFN 42 / ATCC 51251)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (07 Mar 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRETL347834:GJJ0-1173-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Probable DNA ligase (ATP) proteinImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:RHE_CH01164Imported
    OrganismiRhizobium etli (strain CFN 42 / ATCC 51251)Imported
    Taxonomic identifieri347834 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
    ProteomesiUP000001936: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi347834.RHE_CH01164.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2KB17.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiRVWLWSR.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q2KB17-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR    50
    NVKPAMLREL VLERMDEVLF HYSYDYVGDL AETISLVWDN ERDIDRSALA 100
    QPRLGEVVTR MNGLGRTEVR GYVRDLLDRL DSSGRFAFIK LATGALRIGV 150
    SARLAKQALA DLGGKDVAEI ETLWHGLQPP YETLFQWLAG GGDKPALASP 200
    AIFHSVMLAN AVEEGDLTGL DPADYAAEWK WDGIRVQLSR SGDRRKIYSR 250
    SGDDISGAFP DILEAINFSG VVDGELLVGG TARSNSPTRT FSDLQQRLNR 300
    KTVTAKMLDD YPAFIRAYDM LFDGEEDIRG RNYVDRRERL SDIIDRAPHD 350
    RFDLSPLVPF SSWEELDALR AAPPDPVIEG VMIKRRDSIY QAGRMKGPWF 400
    KWKRNPYNVD AVLMYAQRGH GKRSSYYSDF TFGVWADDED GEQLVPVGKA 450
    YFGFTDAELE LLDKFVRNNT TERFGPVRAV RADRDFGFVV EVAFEGINRS 500
    TRHKSGVAMR FPRIARLRPD KPPYEADRLR TLIAMIDAKP G 541
    Length:541
    Mass (Da):60,974
    Last modified:March 7, 2006 - v1
    Checksum:i363C43532BA8534F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000133 Genomic DNA. Translation: ABC89969.1.
    RefSeqiWP_011424503.1. NC_007761.1.
    YP_468696.1. NC_007761.1.

    Genome annotation databases

    EnsemblBacteriaiABC89969; ABC89969; RHE_CH01164.
    GeneIDi3890788.
    KEGGiret:RHE_CH01164.
    PATRICi23083689. VBIRhiEtl108884_1518.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000133 Genomic DNA. Translation: ABC89969.1 .
    RefSeqi WP_011424503.1. NC_007761.1.
    YP_468696.1. NC_007761.1.

    3D structure databases

    ProteinModelPortali Q2KB17.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 347834.RHE_CH01164.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABC89969 ; ABC89969 ; RHE_CH01164 .
    GeneIDi 3890788.
    KEGGi ret:RHE_CH01164.
    PATRICi 23083689. VBIRhiEtl108884_1518.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi RVWLWSR.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci RETL347834:GJJ0-1173-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CFN 42 / ATCC 51251Imported.

    Entry informationi

    Entry nameiQ2KB17_RHIEC
    AccessioniPrimary (citable) accession number: Q2KB17
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 7, 2006
    Last sequence update: March 7, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3