Q2KB17 (Q2KB17_RHIEC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Probable DNA ligase (ATP) protein EMBL ABC89969.1
EC=6.5.1.1 EMBL ABC89969.1

Gene names

Ordered Locus Names:

RHE_CH01164 EMBL ABC89969.1

Organism

Rhizobium etli (strain CFN 42 / ATCC 51251) [Complete proteome] [HAMAP] EMBL ABC89969.1

Taxonomic identifier

347834 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium › Rhizobium etli

Protein attributes

Sequence length	541 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABC89969.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q2KB17 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: 363C43532BA8534F	FASTA	541	60,974
	10 20 30 40 50 60 MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR NVKPAMLREL 70 80 90 100 110 120 VLERMDEVLF HYSYDYVGDL AETISLVWDN ERDIDRSALA QPRLGEVVTR MNGLGRTEVR 130 140 150 160 170 180 GYVRDLLDRL DSSGRFAFIK LATGALRIGV SARLAKQALA DLGGKDVAEI ETLWHGLQPP 190 200 210 220 230 240 YETLFQWLAG GGDKPALASP AIFHSVMLAN AVEEGDLTGL DPADYAAEWK WDGIRVQLSR 250 260 270 280 290 300 SGDRRKIYSR SGDDISGAFP DILEAINFSG VVDGELLVGG TARSNSPTRT FSDLQQRLNR 310 320 330 340 350 360 KTVTAKMLDD YPAFIRAYDM LFDGEEDIRG RNYVDRRERL SDIIDRAPHD RFDLSPLVPF 370 380 390 400 410 420 SSWEELDALR AAPPDPVIEG VMIKRRDSIY QAGRMKGPWF KWKRNPYNVD AVLMYAQRGH 430 440 450 460 470 480 GKRSSYYSDF TFGVWADDED GEQLVPVGKA YFGFTDAELE LLDKFVRNNT TERFGPVRAV 490 500 510 520 530 540 RADRDFGFVV EVAFEGINRS TRHKSGVAMR FPRIARLRPD KPPYEADRLR TLIAMIDAKP G

References

[1]

"The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons." Gonzalez V., Santamaria R.I., Bustos P., Hernandez-Gonzalez I., Medrano-Soto A., Moreno-Hagelsieb G., Janga S.C., Ramirez M.A., Jimenez-Jacinto V., Collado-Vides J., Davila G. Proc. Natl. Acad. Sci. U.S.A. 103:3834-3839(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CFN 42 / ATCC 51251.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000133 Genomic DNA. Translation: ABC89969.1.
RefSeq	YP_468696.1. NC_007761.1.
3D structure databases
ProteinModelPortal	Q2KB17.
ModBase	Search...
Protein-protein interaction databases
STRING	347834.RHE_CH01164.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABC89969; ABC89969; RHE_CH01164.
GeneID	3890788.
KEGG	ret:RHE_CH01164.
PATRIC	23083689. VBIRhiEtl108884_1518.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	RETL347834:GJJ0-1173-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2KB17_RHIEC

Accession

Primary (citable) accession number: Q2KB17

Entry history

Integrated into UniProtKB/TrEMBL:	March 7, 2006
Last sequence update:	March 7, 2006
Last modified:	May 1, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)