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Q2K0P3

- Q2K0P3_RHIEC

UniProt

Q2K0P3 - Q2K0P3_RHIEC

Protein
Submitted name:

Putative ATP-dependent DNA ligase protein

Gene

RHE_PE00252

Organism
Rhizobium etli (strain CFN 42 / ATCC 51251)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (07 Mar 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRETL347834:GJJ0-4969-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligase proteinImported
    Gene namesi
    Ordered Locus Names:RHE_PE00252Imported
    Encoded oniPlasmid p42eImported
    OrganismiRhizobium etli (strain CFN 42 / ATCC 51251)Imported
    Taxonomic identifieri347834 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
    ProteomesiUP000001936: Plasmid p42e

    Interactioni

    Protein-protein interaction databases

    STRINGi347834.RHE_PE00252.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2K0P3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q2K0P3-1 [UniParc]FASTAAdd to Basket

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    MASDKLSSYR SKRDFQKTAE PSGERSLKQS NRRRFVIQKH DATRLHYDLR    50
    LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
    GTVMLWDRGY WEPEGRKSPE QALSKGDFKF TLEGERLHGS FVLVRMRNDR 150
    ERSKRTNWLL IKHHDEFSVD ENGASILEEN VTSVASGRSM EMIAAGKGRK 200
    PKPFMVEGGK VQADAVWDSN HGLAAEERQS EASAGKRAGT ATAVDLPDFI 250
    APQLCEKVER PPGGDGWIHE IKFDGYRIQM RVLDGEVTLK TRKGLDWTAK 300
    YPEIAEAASG LPDCILDGEI CALDEQGAPN FAALQAALSE GKTASLVYFA 350
    FDLLYDGGED LRSKPLIERK RRLQELLTEA GNDPRIRYVE HFETGGDAVL 400
    RSACKLSLEG IISKQTDAPY QSGRTESWAK SKCRAGHEVV IGAYAKTNGR 450
    FRSLLAGVFR GDHFVYVGRV GTGYGAKKVE TLLPKLKALE TARSPFTGIG 500
    APKKQAEVVW VKPELVAEIE FEGWTADGLV RQAAFKGLRE DKPAREVEAE 550
    PPVRPAKADI AEPVPRARQT PARRKGAKAD VMGVLISNPD KPLWPDANGS 600
    EPVTKEELAG YYEAVGDWMI DHIKGRPCSI IRAPDGIGGE QFFQRHAMPG 650
    QSNLLDLVKV FGDKKPYLQI DRIEGLAAVA QIAAVELHPW NCEPGQPEVP 700
    GRLVFDLDPG PDVPFATVVA AAREMRDRLE DLGLISFCKT TGGKGLHVVT 750
    PLAVNKRKPL SWPEAKAFAH DVCQQMARNN PDLYLIKMTK SLRGGRIFLD 800
    YLRNDRMATA VAPLSPRARP GATVSMPLTW TQVKSDLDPK RFTIRTVPAL 850
    LSKSSAWKDY CEGQRPLEQA IKKLGRAGKH AA 882
    Length:882
    Mass (Da):97,521
    Last modified:March 7, 2006 - v1
    Checksum:i8C9E45DB21C6FFE6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000137 Genomic DNA. Translation: ABC93687.1.
    RefSeqiWP_011428106.1. NC_007765.1.
    YP_472414.1. NC_007765.1.

    Genome annotation databases

    EnsemblBacteriaiABC93687; ABC93687; RHE_PE00252.
    GeneIDi3895678.
    KEGGiret:RHE_PE00252.
    PATRICi23091770. VBIRhiEtl108884_5514.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000137 Genomic DNA. Translation: ABC93687.1 .
    RefSeqi WP_011428106.1. NC_007765.1.
    YP_472414.1. NC_007765.1.

    3D structure databases

    ProteinModelPortali Q2K0P3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 347834.RHE_PE00252.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABC93687 ; ABC93687 ; RHE_PE00252 .
    GeneIDi 3895678.
    KEGGi ret:RHE_PE00252.
    PATRICi 23091770. VBIRhiEtl108884_5514.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RETL347834:GJJ0-4969-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CFN 42 / ATCC 51251Imported.

    Entry informationi

    Entry nameiQ2K0P3_RHIEC
    AccessioniPrimary (citable) accession number: Q2K0P3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 7, 2006
    Last sequence update: March 7, 2006
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, PlasmidImported, Reference proteomeImported

    External Data

    Dasty 3