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Q2K0P3 (Q2K0P3_RHIEC) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:RHE_PE00252 EMBL ABC93687.1
Encoded onPlasmid p42e Ref.1 EMBL ABC93687.1
OrganismRhizobium etli (strain CFN 42 / ATCC 51251) [Complete proteome] [HAMAP] EMBL ABC93687.1
Taxonomic identifier347834 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Protein attributes

Sequence length882 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABC93687.1
   Technical termComplete proteome
Plasmid EMBL ABC93687.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q2K0P3 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: 8C9E45DB21C6FFE6

FASTA88297,521
        10         20         30         40         50         60 
MASDKLSSYR SKRDFQKTAE PSGERSLKQS NRRRFVIQKH DATRLHYDLR LELDGVFKSW 

        70         80         90        100        110        120 
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGY WEPEGRKSPE 

       130        140        150        160        170        180 
QALSKGDFKF TLEGERLHGS FVLVRMRNDR ERSKRTNWLL IKHHDEFSVD ENGASILEEN 

       190        200        210        220        230        240 
VTSVASGRSM EMIAAGKGRK PKPFMVEGGK VQADAVWDSN HGLAAEERQS EASAGKRAGT 

       250        260        270        280        290        300 
ATAVDLPDFI APQLCEKVER PPGGDGWIHE IKFDGYRIQM RVLDGEVTLK TRKGLDWTAK 

       310        320        330        340        350        360 
YPEIAEAASG LPDCILDGEI CALDEQGAPN FAALQAALSE GKTASLVYFA FDLLYDGGED 

       370        380        390        400        410        420 
LRSKPLIERK RRLQELLTEA GNDPRIRYVE HFETGGDAVL RSACKLSLEG IISKQTDAPY 

       430        440        450        460        470        480 
QSGRTESWAK SKCRAGHEVV IGAYAKTNGR FRSLLAGVFR GDHFVYVGRV GTGYGAKKVE 

       490        500        510        520        530        540 
TLLPKLKALE TARSPFTGIG APKKQAEVVW VKPELVAEIE FEGWTADGLV RQAAFKGLRE 

       550        560        570        580        590        600 
DKPAREVEAE PPVRPAKADI AEPVPRARQT PARRKGAKAD VMGVLISNPD KPLWPDANGS 

       610        620        630        640        650        660 
EPVTKEELAG YYEAVGDWMI DHIKGRPCSI IRAPDGIGGE QFFQRHAMPG QSNLLDLVKV 

       670        680        690        700        710        720 
FGDKKPYLQI DRIEGLAAVA QIAAVELHPW NCEPGQPEVP GRLVFDLDPG PDVPFATVVA 

       730        740        750        760        770        780 
AAREMRDRLE DLGLISFCKT TGGKGLHVVT PLAVNKRKPL SWPEAKAFAH DVCQQMARNN 

       790        800        810        820        830        840 
PDLYLIKMTK SLRGGRIFLD YLRNDRMATA VAPLSPRARP GATVSMPLTW TQVKSDLDPK 

       850        860        870        880 
RFTIRTVPAL LSKSSAWKDY CEGQRPLEQA IKKLGRAGKH AA 

« Hide

References

[1]"The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons."
Gonzalez V., Santamaria R.I., Bustos P., Hernandez-Gonzalez I., Medrano-Soto A., Moreno-Hagelsieb G., Janga S.C., Ramirez M.A., Jimenez-Jacinto V., Collado-Vides J., Davila G.
Proc. Natl. Acad. Sci. U.S.A. 103:3834-3839(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CFN 42 / ATCC 51251.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000137 Genomic DNA. Translation: ABC93687.1.
RefSeqYP_472414.1. NC_007765.1.

3D structure databases

ProteinModelPortalQ2K0P3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING347834.RHE_PE00252.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABC93687; ABC93687; RHE_PE00252.
GeneID3895678.
KEGGret:RHE_PE00252.
PATRIC23091770. VBIRhiEtl108884_5514.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALELHPWN.
OrthoDBEOG661H49.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycRETL347834:GJJ0-4969-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2K0P3_RHIEC
AccessionPrimary (citable) accession number: Q2K0P3
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: April 16, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)