Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Putative ATP-dependent DNA ligase protein

Gene

RHE_PE00252

Organism
Rhizobium etli (strain CFN 42 / ATCC 51251)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRETL347834:GJJ0-4969-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligase proteinImported
Gene namesi
Ordered Locus Names:RHE_PE00252Imported
Encoded oniPlasmid p42eImported
OrganismiRhizobium etli (strain CFN 42 / ATCC 51251)Imported
Taxonomic identifieri347834 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
ProteomesiUP000001936 Componenti: Plasmid p42e

Interactioni

Protein-protein interaction databases

STRINGi347834.RHE_PE00252.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2K0P3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASDKLSSYR SKRDFQKTAE PSGERSLKQS NRRRFVIQKH DATRLHYDLR
60 70 80 90 100
LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDRGY WEPEGRKSPE QALSKGDFKF TLEGERLHGS FVLVRMRNDR
160 170 180 190 200
ERSKRTNWLL IKHHDEFSVD ENGASILEEN VTSVASGRSM EMIAAGKGRK
210 220 230 240 250
PKPFMVEGGK VQADAVWDSN HGLAAEERQS EASAGKRAGT ATAVDLPDFI
260 270 280 290 300
APQLCEKVER PPGGDGWIHE IKFDGYRIQM RVLDGEVTLK TRKGLDWTAK
310 320 330 340 350
YPEIAEAASG LPDCILDGEI CALDEQGAPN FAALQAALSE GKTASLVYFA
360 370 380 390 400
FDLLYDGGED LRSKPLIERK RRLQELLTEA GNDPRIRYVE HFETGGDAVL
410 420 430 440 450
RSACKLSLEG IISKQTDAPY QSGRTESWAK SKCRAGHEVV IGAYAKTNGR
460 470 480 490 500
FRSLLAGVFR GDHFVYVGRV GTGYGAKKVE TLLPKLKALE TARSPFTGIG
510 520 530 540 550
APKKQAEVVW VKPELVAEIE FEGWTADGLV RQAAFKGLRE DKPAREVEAE
560 570 580 590 600
PPVRPAKADI AEPVPRARQT PARRKGAKAD VMGVLISNPD KPLWPDANGS
610 620 630 640 650
EPVTKEELAG YYEAVGDWMI DHIKGRPCSI IRAPDGIGGE QFFQRHAMPG
660 670 680 690 700
QSNLLDLVKV FGDKKPYLQI DRIEGLAAVA QIAAVELHPW NCEPGQPEVP
710 720 730 740 750
GRLVFDLDPG PDVPFATVVA AAREMRDRLE DLGLISFCKT TGGKGLHVVT
760 770 780 790 800
PLAVNKRKPL SWPEAKAFAH DVCQQMARNN PDLYLIKMTK SLRGGRIFLD
810 820 830 840 850
YLRNDRMATA VAPLSPRARP GATVSMPLTW TQVKSDLDPK RFTIRTVPAL
860 870 880
LSKSSAWKDY CEGQRPLEQA IKKLGRAGKH AA
Length:882
Mass (Da):97,521
Last modified:March 7, 2006 - v1
Checksum:i8C9E45DB21C6FFE6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000137 Genomic DNA. Translation: ABC93687.1.
RefSeqiWP_011428106.1. NC_007765.1.
YP_472414.1. NC_007765.1.

Genome annotation databases

EnsemblBacteriaiABC93687; ABC93687; RHE_PE00252.
KEGGiret:RHE_PE00252.
PATRICi23091770. VBIRhiEtl108884_5514.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000137 Genomic DNA. Translation: ABC93687.1.
RefSeqiWP_011428106.1. NC_007765.1.
YP_472414.1. NC_007765.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi347834.RHE_PE00252.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC93687; ABC93687; RHE_PE00252.
KEGGiret:RHE_PE00252.
PATRICi23091770. VBIRhiEtl108884_5514.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciRETL347834:GJJ0-4969-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CFN 42 / ATCC 51251Imported.

Entry informationi

Entry nameiQ2K0P3_RHIEC
AccessioniPrimary (citable) accession number: Q2K0P3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: April 29, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.