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Q2K0P1 (Q2K0P1_RHIEC) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ABC93686.1
Gene names
Ordered Locus Names:RHE_PE00251 EMBL ABC93686.1
Encoded onPlasmid p42e Ref.1 EMBL ABC93686.1
OrganismRhizobium etli (strain CFN 42 / ATCC 51251) [Complete proteome] [HAMAP] EMBL ABC93686.1
Taxonomic identifier347834 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Protein attributes

Sequence length354 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABC93686.1
   Technical termComplete proteome
Plasmid EMBL ABC93686.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q2K0P1 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: A73477B36C00886F

FASTA35439,597
        10         20         30         40         50         60 
MTRSRRPSAP LLRDSSSSIQ SRPVRRRDPD QPNLPFDAMP SRVEPCLALL KQTVPQGPDW 

        70         80         90        100        110        120 
LYEVKWDGYR LALHIEPKGI RILTRGGHDW TRRFPTIAAR ARELGVSSCI LDGEAVVLDE 

       130        140        150        160        170        180 
EGRSDFGALQ RSLGGRGGKR ISTESIFYAF DLLYLDGHDL TRTELSVRRH LLEDLIPAAD 

       190        200        210        220        230        240 
GGAIRFSQEL DLGGEELLEH ACRLGMEGII AKRTDSPYRS GRLGDWQKIK CVQSESFMIV 

       250        260        270        280        290        300 
GYEESASTRG GLGSLLLAGR KGHDWIYVGS VGTGFNRTEA EYLRKTLNRL QTKKPIVPLK 

       310        320        330        340        350 
GKRLVFSQPT LIAEIEFRGW TREGSLRHPS YKGLREIQDN AAVFDMADGP AAIR 

« Hide

References

[1]"The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons."
Gonzalez V., Santamaria R.I., Bustos P., Hernandez-Gonzalez I., Medrano-Soto A., Moreno-Hagelsieb G., Janga S.C., Ramirez M.A., Jimenez-Jacinto V., Collado-Vides J., Davila G.
Proc. Natl. Acad. Sci. U.S.A. 103:3834-3839(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CFN 42 / ATCC 51251.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000137 Genomic DNA. Translation: ABC93686.1.
RefSeqYP_472413.1. NC_007765.1.

3D structure databases

ProteinModelPortalQ2K0P1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING347834.RHE_PE00251.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABC93686; ABC93686; RHE_PE00251.
GeneID3895677.
KEGGret:RHE_PE00251.
PATRIC23091768. VBIRhiEtl108884_5513.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222509.
KOK01971.
OMAQDNAAVF.
OrthoDBEOG661H49.
ProtClustDBCLSK806855.

Enzyme and pathway databases

BioCycRETL347834:GJJ0-4968-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2K0P1_RHIEC
AccessionPrimary (citable) accession number: Q2K0P1
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: April 16, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)