Q2JYL0 (Q2JYL0_RHIEC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
D-amino acid dehydrogenase small subunit HAMAP MF_01202
EC=1.4.99.1 HAMAP MF_01202

Gene names

Name:	dadA HAMAP MF_01202 EMBL ABC94326.1
Ordered Locus Names:	RHE_PF00436

Encoded on

Plasmid p42f EMBL ABC94326.1

Organism

Rhizobium etli (strain CFN 42 / ATCC 51251) [Complete proteome] [HAMAP]

Taxonomic identifier

347834 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	422 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202 SAAS SAAS023080
Catalytic activity	A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202 SAAS SAAS023080
Cofactor	FAD By similarity. HAMAP MF_01202 SAAS SAAS023080
Pathway	Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202
Subunit structure	Heterodimer of a small and a large subunit By similarity. HAMAP MF_01202 SAAS SAAS023080
Sequence similarities	Belongs to the DadA oxidoreductase family. HAMAP MF_01202

Ontologies

Keywords
Ligand	FAD HAMAP MF_01202 SAAS SAAS023080 Flavoprotein HAMAP MF_01202 SAAS SAAS023080
Molecular function	Oxidoreductase HAMAP MF_01202 SAAS SAAS023080
Technical term	Complete proteome Plasmid EMBL ABC94326.1
Gene Ontology (GO)
Biological process	alanine catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Nucleotide binding	3 – 17	15	FAD By similarity HAMAP MF_01202

Sequences

	Sequence		Length	Mass (Da)
	Q2JYL0 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: 14B73473F6DC209F	FASTA	422	45,696
	10 20 30 40 50 60 MKVIVLGAGI VGVTSAYQLA KSGHEVTVVD RQSGPALETS FANAGEVSFG YCSPWAAPGI 70 80 90 100 110 120 PMKAMKWLFM KHAPLILRPK LDMAMLSWMA RMLSNCTSER YAINKSRMLR LADYSRIALA 130 140 150 160 170 180 ELRAETGIAY DERMQGTLQL FRTQQQLDAS AKDVKALAAD GIPYEVLDRD GCIRVEPALK 190 200 210 220 230 240 HVRDKIVGGL LTPKDETGDC FKFTNALAVK ADALGVRFAY GTTIKALDVE GGRVRGIVTD 250 260 270 280 290 300 RDPDRERERM DADAVVVALG SYSPLLLKPF GISLPVYPVK GYSLTIPITD ASRAPESTVM 310 320 330 340 350 360 DETYKIAITR LGDRIRVGGM AEISGYTNDL GLARRSTLEH SVTDLFPGGD VSKASFWSGL 370 380 390 400 410 420 RPMTPDGTPV IGPTKIGGLF LNTGHGTLGW TMSTGSARLI SDLVSARTPE IDSRDLAVSR YA

References

[1]

"The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons." Gonzalez V., Santamaria R.I., Bustos P., Hernandez-Gonzalez I., Medrano-Soto A., Moreno-Hagelsieb G., Janga S.C., Ramirez M.A., Jimenez-Jacinto V., Collado-Vides J., Davila G. Proc. Natl. Acad. Sci. U.S.A. 103:3834-3839(2006) [PubMed: 16505379] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000138 Genomic DNA. Translation: ABC94326.1.
RefSeq	YP_473053.1. NC_007766.1.
3D structure databases
ProteinModelPortal	Q2JYL0.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2JYL0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3895989.
GenomeReviews	Gene locus RHE_PF00436 in contig CP000138_GR.
KEGG	ret:RHE_PF00436.
PATRIC	23093157. VBIRhiEtl108884_6207.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0665.
HOGENOM	HBG729204.
OMA	VDRQPAV.
PhylomeDB	Q2JYL0.
ProtClustDB	PRK00711.
Family and domain databases
HAMAP	MF_01202. DadA. [Tree]
InterPro	IPR023080. D-aa_DH_ssu_DadA. IPR006076. FAD-dep_OxRdtase. [Graphical view]
KO	K00285.
Pfam	PF01266. DAO. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2JYL0_RHIEC

Accession

Primary (citable) accession number: Q2JYL0

Entry history

Integrated into UniProtKB/TrEMBL:	March 7, 2006
Last sequence update:	March 7, 2006
Last modified:	December 14, 2011
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)