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Q2JY25 (Q2JY25_SYNJA) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Selenide, water dikinase HAMAP MF_00625
EC=2.7.9.3 HAMAP MF_00625
Alternative name(s):
Selenium donor protein HAMAP MF_00625
Selenophosphate synthase HAMAP MF_00625
Gene names
Name:selD HAMAP MF_00625
Ordered Locus Names:CYA_0055
OrganismSynechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime) [Complete proteome] [HAMAP]
Taxonomic identifier321327 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length352 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625 SAAS SAAS023061

Catalytic activity

ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625 SAAS SAAS023061

Cofactor

Magnesium By similarity. HAMAP MF_00625 SAAS SAAS023061

Sequence similarities

Belongs to the selenophosphate synthase 1 family. Class I subfamily. HAMAP MF_00625

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding229 – 2357ATP By similarity HAMAP MF_00625

Sites

Active site161 By similarity HAMAP MF_00625
Site191Important for catalytic activity By similarity HAMAP MF_00625

Sequences

Sequence LengthMass (Da)Tools
Q2JY25 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: 1F96685F3C115D93

FASTA35237,092
        10         20         30         40         50         60 
MDTPLRLTQY SHGGGCGCKI APALLQQILK ELPLFWSDPA LLVGSETSDD AAVYQLNDEQ 

        70         80         90        100        110        120 
TLILTTDFFM PIVDDPVDFG RIAAANALSD VYAMGGTPIL ALAILGMPVD RLPLSAIREI 

       130        140        150        160        170        180 
MAGGIKVCQE AGIPLAGGHS IDSPEPIFGL VAAGLAHPQH IRRNATARPG DDLILTKPLG 

       190        200        210        220        230        240 
IGVMTTALKK GQLSAAGYAE VLQVMTQLNR IGPQLAQRAQ VRALTDVTGF GLLGHLLEVC 

       250        260        270        280        290        300 
RGSGVSAELD LAAIPFLTEA LSLAEAGIFP GAARRNWQGY EGVEANSLPE WQQLLLSDPQ 

       310        320        330        340        350 
TSGGLLVAVD PAYTAELLQE LHSAGYSYAR RIGRCQAGEG IAIRVVGEMP VA

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References

[1]"Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
ISME J. 1:703-713(2007) [PubMed: 18059494] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JA-3-3Ab.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000239 Genomic DNA. Translation: ABC98287.1.
RefSeqYP_473550.1. NC_007775.1.

3D structure databases

ProteinModelPortalQ2JY25.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ2JY25.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3897761.
GenomeReviewsGene locus CYA_0055 in contig CP000239_GR.
KEGGcya:CYA_0055.
PATRIC23808371. VBISynSp90045_0054.
TIGRCYA_0055.

Phylogenomic databases

eggNOGCOG0709.
HOGENOMHBG383791.
OMAMMAIAIL.
PhylomeDBQ2JY25.
ProtClustDBCLSK750049.

Enzyme and pathway databases

BioCycSSP321327:CYA_0055-MONOMER.

Family and domain databases

HAMAPMF_00625. SelD.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR016188. PurM_N-like.
IPR004536. SelD.
IPR023061. SelD_I.
[Graphical view]
KOK01008.
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMSSF56042. AIR_synth_C. 1 hit.
SSF55326. PurM_N-like. 1 hit.
TIGRFAMsTIGR00476. SelD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ2JY25_SYNJA
AccessionPrimary (citable) accession number: Q2JY25
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: January 25, 2012
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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