Q2JT33 (Q2JT33_SYNJA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase sigma-70 factor family EMBL ABD00177.1

Gene names

Ordered Locus Names:

CYA_2037

Organism

Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime) [Complete proteome] [HAMAP]

Taxonomic identifier

321327 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	364 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q2JT33 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: 8C250BCA8B29BF10	FASTA	364	42,188
	10 20 30 40 50 60 MSNYEPELND ILLDGDLLDP AEEAEVDLAE SEFAEEEPAR RSTDLVRLYL QEIGRVPLLG 70 80 90 100 110 120 RDEEVALAQR VQDYMKLLDV RLRLQKELGR EPTLAEWAAR ANQYPEWANL TPEKLQQIQR 130 140 150 160 170 180 IGKRAKEHMI KANLRLVVSV AKKYQNRGLE LLDLIQEGTL GLERAVEKFD PKKGYRFSTY 190 200 210 220 230 240 AYWWIRQGIT RAIATQSRTI RLPVHITEKL NKIKKAQRKL SQEKGRTPTI EDIASELEMT 250 260 270 280 290 300 VPQVRELLVR VPRSVSLETK VGKDKDTELG DLLETDDISP EETMMREALH RDLQQLLADL 310 320 330 340 350 360 TSRERDVIRM RFGLGDGRTY SLAEIGRALD LSRERVRQIE AKALQKLRQP KRRNRVRDYL EAIS

References

[1]

"Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses." Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F. ISME J. 1:703-713(2007) [PubMed: 18059494] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JA-3-3Ab.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000239 Genomic DNA. Translation: ABD00177.1.
RefSeq	YP_475440.1. NC_007775.1.
3D structure databases
ProteinModelPortal	Q2JT33.
SMR	Q2JT33. Positions 115-196.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2JT33.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3899405.
GenomeReviews	Gene locus CYA_2037 in contig CP000239_GR.
KEGG	cya:CYA_2037.
PATRIC	23812346. VBISynSp90045_2008.
TIGR	CYA_2037.
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	Q2JT33.
ProtClustDB	PRK07598.
Enzyme and pathway databases
BioCyc	SSP321327:CYA_2037-MONOMER.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 3 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2JT33_SYNJA

Accession

Primary (citable) accession number: Q2JT33

Entry history

Integrated into UniProtKB/TrEMBL:	March 7, 2006
Last sequence update:	March 7, 2006
Last modified:	January 25, 2012
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)