Q2JSP6 (Q2JSP6_SYNJA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Starch binding domain protein EMBL ABD00323.1

Gene names

Ordered Locus Names:

CYA_2183

Organism

Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime) [Complete proteome] [HAMAP]

Taxonomic identifier

321327 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	763 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro hydrolase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q2JSP6 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: 061545C7573B7113	FASTA	763	86,320
	10 20 30 40 50 60 MYRFQVRATT QPGDRIALVG SSPQLGAWDP CRCVWLQTDP DRYPLWWVEL PLGPADGTSS 70 80 90 100 110 120 PLSSGEGLEE TPRLEYRYLR VQADGEVIWE AADRNRWVPL EPEPLPAVLI VEDGEFGRIP 130 140 150 160 170 180 FYPYGYFALP VSEPEPEDCP GLKIVVLGSS VALGCSAWLL RGWAWLLQKA LRERYGHQVR 190 200 210 220 230 240 NLSELGANVS RTLARFEQVV IPEHPDVVIV ALSLGNEGLA TALPEHRRAV QRRFENGLQR 250 260 270 280 290 300 LIQRIQDIGA LPVLGGVYPH ADYGLEQHLL LQETQQRMLS WGCPVFNWLP ILDDGQGRWK 310 320 330 340 350 360 PDLAFDAAHP NTKGHQLMFA AIDLSIFDPN TVKSAPLKLA SSKEKLIFED PSGFWAALEG 370 380 390 400 410 420 QNRFRLVNIT PYDYTLTPTW QSLQAAFQEA RLQPGLYIGK SGEKGQDQPL YSLSIHENGL 430 440 450 460 470 480 IQTTLSIPPD ADLVFSPAAD FFSPESSEIV FSDGTLTLLK LSYPSAGLDP KPRLCVINQS 490 500 510 520 530 540 SYEYNIHPMW KEVRAALKAL PTGVYEDPLY RDAPFRTLMI GERGLESRVK AAPNSVMLLE 550 560 570 580 590 600 YTCALSDIHR VAVVPLGDRC AVRMLLYKLE YDGPAFPFDL TRTSNLADVA DMIHHEFQGM 610 620 630 640 650 660 WDPQYLHYSP EDRRIYHSKW TGLSFGHEVE EGEDPLQNMN PIHERMRTRY TARAKRFLYV 670 680 690 700 710 720 LEKADKTLFV RTGGCQRGAV IDLMDKLSAK RKGKPFLLLI ISPQPSEEFA GIPNVIHYDM 730 740 750 760 EFNPDRMCAD PEHWRYCTEI MREILHSLGV SSRNLFWCPP QPA

References

[1]

"Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses." Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F. ISME J. 1:703-713(2007) [PubMed: 18059494] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JA-3-3Ab.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000239 Genomic DNA. Translation: ABD00323.1.
RefSeq	YP_475586.1. NC_007775.1.
3D structure databases
ProteinModelPortal	Q2JSP6.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2JSP6.
Protein family/group databases
CAZy	CBM20. Carbohydrate-Binding Module Family 20.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3899055.
GenomeReviews	Gene locus CYA_2183 in contig CP000239_GR.
KEGG	cya:CYA_2183.
PATRIC	23812638. VBISynSp90045_2154.
TIGR	CYA_2183.
Phylogenomic databases
eggNOG	NOG68682.
HOGENOM	HBG439420.
OMA	DRCAVRM.
PhylomeDB	Q2JSP6.
ProtClustDB	CLSK423166.
Enzyme and pathway databases
BioCyc	SSP321327:CYA_2183-MONOMER.
Family and domain databases
InterPro	IPR013784. Carb-bd-like_fold. IPR002044. CBM_fam20. IPR014903. DUF1796_papain-like. IPR013830. Esterase_SGNH_hydro-type. IPR013831. Esterase_SGNH_hydro-type_subgr. IPR013783. Ig-like_fold. [Graphical view]
Gene3D	G3DSA:3.40.50.1110. Esterase_SGNH_hydro-type_subgr. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 1 hit.
Pfam	PF00686. CBM_20. 1 hit. PF08795. DUF1796. 1 hit. [Graphical view]
SMART	SM01065. CBM_2. 1 hit. [Graphical view]
SUPFAM	SSF49452. CBD_4. 1 hit. SSF52266. Esterase_SGNH_hydro-type. 1 hit.
PROSITE	PS51166. CBM20. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2JSP6_SYNJA

Accession

Primary (citable) accession number: Q2JSP6

Entry history

Integrated into UniProtKB/TrEMBL:	March 7, 2006
Last sequence update:	March 7, 2006
Last modified:	January 25, 2012
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)