Q2JSC9 (RPIA_SYNJA) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribose-5-phosphate isomerase A
EC=5.3.1.6

Alternative name(s):
Phosphoriboisomerase A
Short name=PRI

Gene names

Name:	rpiA
Ordered Locus Names:	CYA_2325

Organism

Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime) [Complete proteome] [HAMAP]

Taxonomic identifier

321327 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	230 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	D-ribose 5-phosphate = D-ribulose 5-phosphate. HAMAP MF_00170
Pathway	Carbohydrate degradation; pentose phosphate pathway; D-ribose 5-phosphate from D-ribulose 5-phosphate (non-oxidative stage): step 1/1. HAMAP MF_00170
Sequence similarities	Belongs to the ribose 5-phosphate isomerase family.

Ontologies

Keywords
Molecular function	Isomerase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	pentose-phosphate shunt, non-oxidative branch Inferred from electronic annotation. Source: InterPro
Molecular function	ribose-5-phosphate isomerase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 230	230	Ribose-5-phosphate isomerase A HAMAP MF_00170		PRO_1000194729

Sequences

	Sequence		Length	Mass (Da)
	Q2JSC9 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: 92E733487A1C15AC	FASTA	230	24,080
	10 20 30 40 50 60 MASADELKQA AAQAAAQKVQ SGMVVGLGTG STAAFAVGAL AQRMQKEGLQ FIGVPTSERT 70 80 90 100 110 120 AEQARSLGIP LATLEEQPRL DLAIDGADEI EVGSLNLIKG AGGALLREKL VEASAAELII 130 140 150 160 170 180 IADASKKVAH LGTRFPVPVE VVRFGWKTTL ARVEALGCQA VLRRTAEGDP YLTDEQHYIL 190 200 210 220 230 DCQFGPIANP AKLAEQLKGT VGVVEHGLFI GMATEAIIAG PEGIETLRQS

References

[1]

"Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses." Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F. ISME J. 1:703-713(2007) [PubMed: 18059494] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JA-3-3Ab.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000239 Genomic DNA. Translation: ABD00452.1.
RefSeq	YP_475715.1. NC_007775.1.
3D structure databases
ProteinModelPortal	Q2JSC9.
SMR	Q2JSC9. Positions 4-228.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2JSC9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3897322.
GenomeReviews	Gene locus CYA_2325 in contig CP000239_GR.
KEGG	cya:CYA_2325.
PATRIC	23812906. VBISynSp90045_2280.
TIGR	CYA_2325.
Phylogenomic databases
eggNOG	COG0120.
HOGENOM	HBG515603.
OMA	NLSLYVD.
PhylomeDB	Q2JSC9.
ProtClustDB	PRK00702.
Enzyme and pathway databases
BioCyc	SSP321327:CYA_2325-MONOMER.
Family and domain databases
HAMAP	MF_00170. Rib_5P_isom_A. [Tree]
InterPro	IPR004788. Ribose5P_isomerase_typA. IPR020672. Ribose5P_isomerase_typA_subgr. [Graphical view]
KO	K01807.
PANTHER	PTHR11934. RpiA. 1 hit.
Pfam	PF06026. Rib_5-P_isom_A. 1 hit. [Graphical view]
TIGRFAMs	TIGR00021. RpiA. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RPIA_SYNJA

Accession

Primary (citable) accession number: Q2JSC9

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	March 7, 2006
Last modified:	January 25, 2012
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program