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Q2JNM6

- GLGA1_SYNJB

UniProt

Q2JNM6 - GLGA1_SYNJB

Protein

Glycogen synthase 1

Gene

glgA1

Organism
Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (07 Mar 2006)
      Previous versions | rss
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    Functioni

    Synthesizes alpha-1,4-glucan chains using ADP-glucose.UniRule annotation

    Catalytic activityi

    ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1).UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei15 – 151ADP-glucoseUniRule annotation

    GO - Molecular functioni

    1. starch synthase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Glycogen biosynthesis

    Enzyme and pathway databases

    BioCyciSSP321332:GH1B-646-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiGT5. Glycosyltransferase Family 5.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glycogen synthase 1UniRule annotation (EC:2.4.1.21UniRule annotation)
    Alternative name(s):
    Starch [bacterial glycogen] synthase 1UniRule annotation
    Gene namesi
    Name:glgA1UniRule annotation
    Ordered Locus Names:CYB_0646
    OrganismiSynechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
    Taxonomic identifieri321332 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
    ProteomesiUP000001938: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 491491Glycogen synthase 1PRO_0000241802Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi321332.CYB_0646.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2JNM6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0297.
    HOGENOMiHOG000294940.
    KOiK00703.
    OMAiSVYCGWV.
    OrthoDBiEOG6JTC6Z.

    Family and domain databases

    HAMAPiMF_00484. Glycogen_synth.
    InterProiIPR001296. Glyco_trans_1.
    IPR011835. Glycogen/starch_synth.
    IPR013534. Starch_synth_cat_dom.
    [Graphical view]
    PfamiPF08323. Glyco_transf_5. 1 hit.
    PF00534. Glycos_transf_1. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02095. glgA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q2JNM6-1 [UniParc]FASTAAdd to Basket

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    MYIVQIASEC APVIKAGGLG DVVYGLSREL EVRGHCVELV LPKYDTMRYD    50
    QIWGLHDAYR DLWVPWYGGA IHCSVYCGWV HGRLCFFIEP HSGDNFFNRG 100
    CYYGCPDDNM RFAFFSKAAL EFLLQSNKRP DIIHCHDWQT GLVPVLLFEI 150
    YKYHGMGNQR VCYTIHNFKH QGFGGPEILW ATGLNREPYY FHYDRLRDNF 200
    NPFSLNFMKG GIVFSNFVTT VSPNHALEVQ FGDYGYGLGH TLYLHRHKFR 250
    GVLNGIDYDI WNPEIDRFIP VRYTAQTLEN KAKNKKALRD RLLLQDVDKP 300
    IVAYIGRLDE QKGVHLVHHA IYRSLFKNAQ FVLLGSATER GIGAWFAHEK 350
    SYLNNNPDVH IELGFNEELS HLIYAGADII VVPSHYEPCG LTQMIGLKYG 400
    TVPVVRGVGG LVDTVFDRDY DPHKLPEQRN GYVFYHTDPA ALESALDRAI 450
    DLWYTAPDQF RQLQIQGMSY DYSWNYPGKE YLEIYDFIRH R 491
    Length:491
    Mass (Da):56,801
    Last modified:March 7, 2006 - v1
    Checksum:i1FD5318D85281584
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000240 Genomic DNA. Translation: ABD01633.1.
    RefSeqiWP_011432291.1. NC_007776.1.
    YP_476896.1. NC_007776.1.

    Genome annotation databases

    EnsemblBacteriaiABD01633; ABD01633; CYB_0646.
    GeneIDi3902301.
    KEGGicyb:CYB_0646.
    PATRICi23803580. VBISynSp29577_0651.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000240 Genomic DNA. Translation: ABD01633.1 .
    RefSeqi WP_011432291.1. NC_007776.1.
    YP_476896.1. NC_007776.1.

    3D structure databases

    ProteinModelPortali Q2JNM6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 321332.CYB_0646.

    Protein family/group databases

    CAZyi GT5. Glycosyltransferase Family 5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABD01633 ; ABD01633 ; CYB_0646 .
    GeneIDi 3902301.
    KEGGi cyb:CYB_0646.
    PATRICi 23803580. VBISynSp29577_0651.

    Phylogenomic databases

    eggNOGi COG0297.
    HOGENOMi HOG000294940.
    KOi K00703.
    OMAi SVYCGWV.
    OrthoDBi EOG6JTC6Z.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci SSP321332:GH1B-646-MONOMER.

    Family and domain databases

    HAMAPi MF_00484. Glycogen_synth.
    InterProi IPR001296. Glyco_trans_1.
    IPR011835. Glycogen/starch_synth.
    IPR013534. Starch_synth_cat_dom.
    [Graphical view ]
    Pfami PF08323. Glyco_transf_5. 1 hit.
    PF00534. Glycos_transf_1. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02095. glgA. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
      Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
      ISME J. 1:703-713(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JA-2-3B'a(2-13).

    Entry informationi

    Entry nameiGLGA1_SYNJB
    AccessioniPrimary (citable) accession number: Q2JNM6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 27, 2006
    Last sequence update: March 7, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3