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Q2JNM6

- GLGA1_SYNJB

UniProt

Q2JNM6 - GLGA1_SYNJB

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Protein

Glycogen synthase 1

Gene

glgA1

Organism
Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Synthesizes alpha-1,4-glucan chains using ADP-glucose.UniRule annotation

Catalytic activityi

ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1).UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei15 – 151ADP-glucoseUniRule annotation

GO - Molecular functioni

  1. starch synthase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Glycogen biosynthesis

Enzyme and pathway databases

BioCyciSSP321332:GH1B-646-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiGT5. Glycosyltransferase Family 5.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycogen synthase 1UniRule annotation (EC:2.4.1.21UniRule annotation)
Alternative name(s):
Starch [bacterial glycogen] synthase 1UniRule annotation
Gene namesi
Name:glgA1UniRule annotation
Ordered Locus Names:CYB_0646
OrganismiSynechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
Taxonomic identifieri321332 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000001938: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 491491Glycogen synthase 1PRO_0000241802Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi321332.CYB_0646.

Structurei

3D structure databases

ProteinModelPortaliQ2JNM6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0297.
HOGENOMiHOG000294940.
KOiK00703.
OMAiSVYCGWV.
OrthoDBiEOG6JTC6Z.

Family and domain databases

HAMAPiMF_00484. Glycogen_synth.
InterProiIPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamiPF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02095. glgA. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2JNM6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYIVQIASEC APVIKAGGLG DVVYGLSREL EVRGHCVELV LPKYDTMRYD
60 70 80 90 100
QIWGLHDAYR DLWVPWYGGA IHCSVYCGWV HGRLCFFIEP HSGDNFFNRG
110 120 130 140 150
CYYGCPDDNM RFAFFSKAAL EFLLQSNKRP DIIHCHDWQT GLVPVLLFEI
160 170 180 190 200
YKYHGMGNQR VCYTIHNFKH QGFGGPEILW ATGLNREPYY FHYDRLRDNF
210 220 230 240 250
NPFSLNFMKG GIVFSNFVTT VSPNHALEVQ FGDYGYGLGH TLYLHRHKFR
260 270 280 290 300
GVLNGIDYDI WNPEIDRFIP VRYTAQTLEN KAKNKKALRD RLLLQDVDKP
310 320 330 340 350
IVAYIGRLDE QKGVHLVHHA IYRSLFKNAQ FVLLGSATER GIGAWFAHEK
360 370 380 390 400
SYLNNNPDVH IELGFNEELS HLIYAGADII VVPSHYEPCG LTQMIGLKYG
410 420 430 440 450
TVPVVRGVGG LVDTVFDRDY DPHKLPEQRN GYVFYHTDPA ALESALDRAI
460 470 480 490
DLWYTAPDQF RQLQIQGMSY DYSWNYPGKE YLEIYDFIRH R
Length:491
Mass (Da):56,801
Last modified:March 7, 2006 - v1
Checksum:i1FD5318D85281584
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000240 Genomic DNA. Translation: ABD01633.1.
RefSeqiWP_011432291.1. NC_007776.1.
YP_476896.1. NC_007776.1.

Genome annotation databases

EnsemblBacteriaiABD01633; ABD01633; CYB_0646.
GeneIDi3902301.
KEGGicyb:CYB_0646.
PATRICi23803580. VBISynSp29577_0651.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000240 Genomic DNA. Translation: ABD01633.1 .
RefSeqi WP_011432291.1. NC_007776.1.
YP_476896.1. NC_007776.1.

3D structure databases

ProteinModelPortali Q2JNM6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 321332.CYB_0646.

Protein family/group databases

CAZyi GT5. Glycosyltransferase Family 5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABD01633 ; ABD01633 ; CYB_0646 .
GeneIDi 3902301.
KEGGi cyb:CYB_0646.
PATRICi 23803580. VBISynSp29577_0651.

Phylogenomic databases

eggNOGi COG0297.
HOGENOMi HOG000294940.
KOi K00703.
OMAi SVYCGWV.
OrthoDBi EOG6JTC6Z.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci SSP321332:GH1B-646-MONOMER.

Family and domain databases

HAMAPi MF_00484. Glycogen_synth.
InterProi IPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view ]
Pfami PF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02095. glgA. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
    Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
    ISME J. 1:703-713(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JA-2-3B'a(2-13).

Entry informationi

Entry nameiGLGA1_SYNJB
AccessioniPrimary (citable) accession number: Q2JNM6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: March 7, 2006
Last modified: October 1, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3