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Q2JM85 (Q2JM85_SYNJB) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Selenide, water dikinase HAMAP MF_00625
EC=2.7.9.3 HAMAP MF_00625
Alternative name(s):
Selenium donor protein HAMAP MF_00625
Selenophosphate synthase HAMAP MF_00625
Gene names
Name:selD HAMAP MF_00625
Ordered Locus Names:CYB_1184
OrganismSynechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime) [Complete proteome] [HAMAP]
Taxonomic identifier321332 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length355 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625 SAAS SAAS023061

Catalytic activity

ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625 SAAS SAAS023061

Cofactor

Magnesium By similarity. HAMAP MF_00625 SAAS SAAS023061

Sequence similarities

Belongs to the selenophosphate synthase 1 family. Class I subfamily. HAMAP MF_00625

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding229 – 2357ATP By similarity HAMAP MF_00625

Sites

Active site161 By similarity HAMAP MF_00625
Site191Important for catalytic activity By similarity HAMAP MF_00625

Sequences

Sequence LengthMass (Da)Tools
Q2JM85 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: 0A6FE37EC5EFAC7D

FASTA35536,966
        10         20         30         40         50         60 
MDAPIRLTQY SHGGGCGCKI APALLQQILK DVPLLSPNPA LLVGAETSDD AAVYQLNDHQ 

        70         80         90        100        110        120 
ALILTTDFFM PIVDEPVDFG RIAATNALSD VYAMGGTPIL ALAVLGMPVN TLPMQAIQGI 

       130        140        150        160        170        180 
MAGGIQVCQE AGIPLAGGHS IDSPEPIFGL VAAGLAHPHH IRRNATAQAG DDLILTKPLG 

       190        200        210        220        230        240 
IGVMTTALKK GQLSAAGYAE VLQVMTQLNR IGSQLAQRPQ VHAMTDVTGF GLVGHLLEVC 

       250        260        270        280        290        300 
RGSGVGASLD LASIPFLAEA LSLAEAGIFP GAARRNWQGY EGVQAESLPE WQQLLLADPQ 

       310        320        330        340        350 
TSGGLLVAVD PGYTSDLLQE LHSAGYPYAR RIGRCQAGDT RIHVTGKISL SPAAA

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References

[1]"Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
ISME J. 1:703-713(2007) [PubMed: 18059494] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JA-2-3B'a(2-13).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000240 Genomic DNA. Translation: ABD02159.1.
RefSeqYP_477422.1. NC_007776.1.

3D structure databases

ProteinModelPortalQ2JM85.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ2JM85.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3900731.
GenomeReviewsGene locus CYB_1184 in contig CP000240_GR.
KEGGcyb:CYB_1184.
PATRIC23804682. VBISynSp29577_1195.
TIGRCYB_1184.

Phylogenomic databases

eggNOGCOG0709.
HOGENOMHBG383791.
OMAMMAIAIL.
PhylomeDBQ2JM85.
ProtClustDBCLSK750049.

Enzyme and pathway databases

BioCycSSP321332:CYB_1184-MONOMER.

Family and domain databases

HAMAPMF_00625. SelD.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR016188. PurM_N-like.
IPR004536. SelD.
IPR023061. SelD_I.
[Graphical view]
KOK01008.
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMSSF56042. AIR_synth_C. 1 hit.
SSF55326. PurM_N-like. 1 hit.
TIGRFAMsTIGR00476. SelD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ2JM85_SYNJB
AccessionPrimary (citable) accession number: Q2JM85
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: January 25, 2012
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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