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Protein

Superoxide dismutase

Gene

sodB

Organism
Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi27Divalent metal cationUniRule annotation1
Metal bindingi79Divalent metal cationUniRule annotation1
Metal bindingi161Divalent metal cationUniRule annotation1
Metal bindingi165Divalent metal cationUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionOxidoreductaseUniRule annotationImported
LigandMetal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciSSP321332:G1G5P-2406-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
Ordered Locus Names:CYB_2514Imported
OrganismiSynechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)Imported
Taxonomic identifieri321332 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesSynechococcaceaeSynechococcus
Proteomesi
  • UP000001938 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi321332.CYB_2514

Structurei

3D structure databases

ProteinModelPortaliQ2JIU7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 87Sod_Fe_NInterPro annotationAdd BLAST85
Domaini94 – 195Sod_Fe_CInterPro annotationAdd BLAST102

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CK4 Bacteria
COG0605 LUCA
HOGENOMiHOG000013584
KOiK04564
OMAiKWGSFDK
OrthoDBiPOG091H03Q7

Family and domain databases

Gene3Di1.10.287.990, 1 hit
2.40.500.20, 1 hit
InterProiView protein in InterPro
IPR001189 Mn/Fe_SOD
IPR019833 Mn/Fe_SOD_BS
IPR019832 Mn/Fe_SOD_C
IPR019831 Mn/Fe_SOD_N
IPR036324 Mn/Fe_SOD_N_sf
IPR036314 SOD_C_sf
PfamiView protein in Pfam
PF02777 Sod_Fe_C, 1 hit
PF00081 Sod_Fe_N, 1 hit
PIRSFiPIRSF000349 SODismutase, 1 hit
PRINTSiPR01703 MNSODISMTASE
SUPFAMiSSF46609 SSF46609, 1 hit
SSF54719 SSF54719, 1 hit
PROSITEiView protein in PROSITE
PS00088 SOD_MN, 1 hit

Sequencei

Sequence statusi: Complete.

Q2JIU7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFELPALPY PADALKPYMS AETFSFHHGK HHAAYVANLN KLIEGTDLAN
60 70 80 90 100
KSLEEIIKAT FGDPDKVGIF NNAAQVWNHT FFWESMKPGG GGAPTGPIAD
110 120 130 140 150
KINADFGSYD KFVEAFKTAA ATQFGSGWAW LVLEDGTLKV TKTPNAENPL
160 170 180 190
VHGQTPLLTL DVWEHAYYLD YQNRRPDFIN AYLEHLVNWD AANARLAAA
Length:199
Mass (Da):21,984
Last modified:March 7, 2006 - v1
Checksum:i19654F626758660D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000240 Genomic DNA Translation: ABD03447.1
RefSeqiWP_011434074.1, NC_007776.1

Genome annotation databases

EnsemblBacteriaiABD03447; ABD03447; CYB_2514
KEGGicyb:CYB_2514

Similar proteinsi

Entry informationi

Entry nameiQ2JIU7_SYNJB
AccessioniPrimary (citable) accession number: Q2JIU7
Entry historyiIntegrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: March 28, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health