Q2JIA4 (Q2JIA4_SYNJB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase sigma-70 factor family EMBL ABD03658.1

Gene names

Ordered Locus Names:

CYB_2734

Organism

Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime) [Complete proteome] [HAMAP]

Taxonomic identifier

321332 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechococcus

Protein attributes

Sequence length	366 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q2JIA4 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: 16565DA3A66E7DFD	FASTA	366	42,373
	10 20 30 40 50 60 MSNYEPELND ILLDGPADLL EAAEEAEVDL ADGEFLEEEP TRRSTDLVRL YLQEIGRVPL 70 80 90 100 110 120 LGRDEEVALA QKVQDYMKLL DLRLRLQKEL GRDPTLAEWV AKANQYPEWA QLTPEKLQQI 130 140 150 160 170 180 QRIGKRAKEH MIKANLRLVV SVAKKYQNRG LELLDLIQEG TLGLERAVEK FDPKKGYRFS 190 200 210 220 230 240 TYAYWWIRQG ITRAIATQSR TIRLPVHITE KLNKIKKAQR KLSQEKGRTP TIEDIASELE 250 260 270 280 290 300 MTPPQVRELL VRVPRSVSLE TKVGKDKDTE LGDLLETDDI SPEETMMREA LHRDLQQLLS 310 320 330 340 350 360 DLTSRERDVI RMRFGLGDGR TYSLAEIGRA LDLSRERVRQ IEAKALQKLR QPKRRNRVRD YLEAIS

References

[1]

"Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses." Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F. ISME J. 1:703-713(2007) [PubMed: 18059494] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JA-2-3B'a(2-13).

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000240 Genomic DNA. Translation: ABD03658.1.
RefSeq	YP_478921.1. NC_007776.1.
3D structure databases
ProteinModelPortal	Q2JIA4.
SMR	Q2JIA4. Positions 117-198.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2JIA4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3901549.
GenomeReviews	Gene locus CYB_2734 in contig CP000240_GR.
KEGG	cyb:CYB_2734.
PATRIC	23807826. VBISynSp29577_2735.
TIGR	CYB_2734.
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	Q2JIA4.
ProtClustDB	PRK07598.
Enzyme and pathway databases
BioCyc	SSP321332:CYB_2734-MONOMER.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2JIA4_SYNJB

Accession

Primary (citable) accession number: Q2JIA4

Entry history

Integrated into UniProtKB/TrEMBL:	March 7, 2006
Last sequence update:	March 7, 2006
Last modified:	January 25, 2012
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)