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Q2JH53 (RECR_SYNJB) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Recombination protein RecR
Gene names
Name:recR
Ordered Locus Names:CYB_2895
OrganismSynechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime) [Complete proteome] [HAMAP]
Taxonomic identifier321332 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus

Protein attributes

Sequence length199 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO By similarity. HAMAP-Rule MF_00017

Sequence similarities

Belongs to the RecR family.

Contains 1 Toprim domain.

Ontologies

Keywords
   Biological processDNA damage
DNA recombination
DNA repair
   DomainZinc-finger
   LigandMetal-binding
Zinc
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: UniProtKB-HAMAP

DNA repair

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

metal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 199199Recombination protein RecR HAMAP-Rule MF_00017
PRO_0000322960

Regions

Domain79 – 17496Toprim
Zinc finger56 – 7116C4-type Potential

Sequences

Sequence LengthMass (Da)Tools
Q2JH53 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: 6B63382E7166FB66

FASTA19922,294
        10         20         30         40         50         60 
MYTRPLARLI EELQRLPGIG SKTAQRLALH LINRPAGEIE ALAKALLEAK QTVRHCSICF 

        70         80         90        100        110        120 
NWSAEDPCEI CRSPQRDPSL WCVVADVKDL IAMERTREFK GLYHVLGGLI SPMNGIGVDQ 

       130        140        150        160        170        180 
LHIRELVARV AREKPQELIF AISPSVEGEV TMHVVKDYLK PVAPTLRMTR LAFGLPMGSE 

       190 
LEYADEVTLA RALEARQEL 

« Hide

References

[1]"Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
ISME J. 1:703-713(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JA-2-3B'a(2-13).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000240 Genomic DNA. Translation: ABD03814.1.
RefSeqYP_479077.1. NC_007776.1.

3D structure databases

ProteinModelPortalQ2JH53.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING321332.CYB_2895.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD03814; ABD03814; CYB_2895.
GeneID3900597.
KEGGcyb:CYB_2895.
PATRIC23808162. VBISynSp29577_2901.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0353.
HOGENOMHOG000103272.
KOK06187.
OMANECEICL.
OrthoDBEOG62NX85.

Enzyme and pathway databases

BioCycSSP321332:GH1B-2895-MONOMER.

Family and domain databases

HAMAPMF_00017. RecR.
InterProIPR000093. DNA_Rcmb_RecR.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023627. Rcmb_RecR.
IPR023628. Rcmb_RecR_C4-type_Zn.
IPR015967. Rcmb_RecR_CS.
IPR006171. Toprim_domain.
[Graphical view]
PfamPF02132. RecR. 1 hit.
PF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTSM00278. HhH1. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMSSF111304. SSF111304. 1 hit.
TIGRFAMsTIGR00615. recR. 1 hit.
PROSITEPS01300. RECR. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRECR_SYNJB
AccessionPrimary (citable) accession number: Q2JH53
Entry history
Integrated into UniProtKB/Swiss-Prot: March 18, 2008
Last sequence update: March 7, 2006
Last modified: May 14, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families