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Q2JH53

- RECR_SYNJB

UniProt

Q2JH53 - RECR_SYNJB

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Protein

Recombination protein RecR

Gene

recR

Organism
Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri56 – 7116C4-typeUniRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. DNA recombination Source: UniProtKB-HAMAP
  2. DNA repair Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA recombination, DNA repair

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciSSP321332:GH1B-2895-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Recombination protein RecRUniRule annotation
Gene namesi
Name:recRUniRule annotation
Ordered Locus Names:CYB_2895
OrganismiSynechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
Taxonomic identifieri321332 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000001938: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 199199Recombination protein RecRPRO_0000322960Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi321332.CYB_2895.

Structurei

3D structure databases

ProteinModelPortaliQ2JH53.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini79 – 17496ToprimUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RecR family.UniRule annotation
Contains 1 Toprim domain.UniRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri56 – 7116C4-typeUniRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiCOG0353.
HOGENOMiHOG000103272.
KOiK06187.
OMAiNECEICL.
OrthoDBiEOG62NX85.

Family and domain databases

HAMAPiMF_00017. RecR.
InterProiIPR000093. DNA_Rcmb_RecR.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023627. Rcmb_RecR.
IPR023628. Rcmb_RecR_C4-type_Zn.
IPR015967. Rcmb_RecR_CS.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF02132. RecR. 1 hit.
PF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTiSM00278. HhH1. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF111304. SSF111304. 1 hit.
TIGRFAMsiTIGR00615. recR. 1 hit.
PROSITEiPS01300. RECR. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2JH53-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYTRPLARLI EELQRLPGIG SKTAQRLALH LINRPAGEIE ALAKALLEAK
60 70 80 90 100
QTVRHCSICF NWSAEDPCEI CRSPQRDPSL WCVVADVKDL IAMERTREFK
110 120 130 140 150
GLYHVLGGLI SPMNGIGVDQ LHIRELVARV AREKPQELIF AISPSVEGEV
160 170 180 190
TMHVVKDYLK PVAPTLRMTR LAFGLPMGSE LEYADEVTLA RALEARQEL
Length:199
Mass (Da):22,294
Last modified:March 7, 2006 - v1
Checksum:i6B63382E7166FB66
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000240 Genomic DNA. Translation: ABD03814.1.
RefSeqiWP_011434433.1. NC_007776.1.
YP_479077.1. NC_007776.1.

Genome annotation databases

EnsemblBacteriaiABD03814; ABD03814; CYB_2895.
GeneIDi3900597.
KEGGicyb:CYB_2895.
PATRICi23808162. VBISynSp29577_2901.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000240 Genomic DNA. Translation: ABD03814.1 .
RefSeqi WP_011434433.1. NC_007776.1.
YP_479077.1. NC_007776.1.

3D structure databases

ProteinModelPortali Q2JH53.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 321332.CYB_2895.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABD03814 ; ABD03814 ; CYB_2895 .
GeneIDi 3900597.
KEGGi cyb:CYB_2895.
PATRICi 23808162. VBISynSp29577_2901.

Phylogenomic databases

eggNOGi COG0353.
HOGENOMi HOG000103272.
KOi K06187.
OMAi NECEICL.
OrthoDBi EOG62NX85.

Enzyme and pathway databases

BioCyci SSP321332:GH1B-2895-MONOMER.

Family and domain databases

HAMAPi MF_00017. RecR.
InterProi IPR000093. DNA_Rcmb_RecR.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023627. Rcmb_RecR.
IPR023628. Rcmb_RecR_C4-type_Zn.
IPR015967. Rcmb_RecR_CS.
IPR006171. Toprim_domain.
[Graphical view ]
Pfami PF02132. RecR. 1 hit.
PF13662. Toprim_4. 1 hit.
[Graphical view ]
SMARTi SM00278. HhH1. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view ]
SUPFAMi SSF111304. SSF111304. 1 hit.
TIGRFAMsi TIGR00615. recR. 1 hit.
PROSITEi PS01300. RECR. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
    Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
    ISME J. 1:703-713(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JA-2-3B'a(2-13).

Entry informationi

Entry nameiRECR_SYNJB
AccessioniPrimary (citable) accession number: Q2JH53
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 18, 2008
Last sequence update: March 7, 2006
Last modified: October 1, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3