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Q2JH53

- RECR_SYNJB

UniProt

Q2JH53 - RECR_SYNJB

Protein

Recombination protein RecR

Gene

recR

Organism
Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 66 (01 Oct 2014)
      Sequence version 1 (07 Mar 2006)
      Previous versions | rss
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    Functioni

    May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri56 – 7116C4-typeUniRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. DNA recombination Source: UniProtKB-HAMAP
    2. DNA repair Source: UniProtKB-HAMAP

    Keywords - Biological processi

    DNA damage, DNA recombination, DNA repair

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    BioCyciSSP321332:GH1B-2895-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Recombination protein RecRUniRule annotation
    Gene namesi
    Name:recRUniRule annotation
    Ordered Locus Names:CYB_2895
    OrganismiSynechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
    Taxonomic identifieri321332 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
    ProteomesiUP000001938: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 199199Recombination protein RecRPRO_0000322960Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi321332.CYB_2895.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2JH53.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini79 – 17496ToprimUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RecR family.UniRule annotation
    Contains 1 Toprim domain.UniRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri56 – 7116C4-typeUniRule annotationAdd
    BLAST

    Keywords - Domaini

    Zinc-finger

    Phylogenomic databases

    eggNOGiCOG0353.
    HOGENOMiHOG000103272.
    KOiK06187.
    OMAiNECEICL.
    OrthoDBiEOG62NX85.

    Family and domain databases

    HAMAPiMF_00017. RecR.
    InterProiIPR000093. DNA_Rcmb_RecR.
    IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
    IPR023627. Rcmb_RecR.
    IPR023628. Rcmb_RecR_C4-type_Zn.
    IPR015967. Rcmb_RecR_CS.
    IPR006171. Toprim_domain.
    [Graphical view]
    PfamiPF02132. RecR. 1 hit.
    PF13662. Toprim_4. 1 hit.
    [Graphical view]
    SMARTiSM00278. HhH1. 1 hit.
    SM00493. TOPRIM. 1 hit.
    [Graphical view]
    SUPFAMiSSF111304. SSF111304. 1 hit.
    TIGRFAMsiTIGR00615. recR. 1 hit.
    PROSITEiPS01300. RECR. 1 hit.
    PS50880. TOPRIM. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q2JH53-1 [UniParc]FASTAAdd to Basket

    « Hide

    MYTRPLARLI EELQRLPGIG SKTAQRLALH LINRPAGEIE ALAKALLEAK    50
    QTVRHCSICF NWSAEDPCEI CRSPQRDPSL WCVVADVKDL IAMERTREFK 100
    GLYHVLGGLI SPMNGIGVDQ LHIRELVARV AREKPQELIF AISPSVEGEV 150
    TMHVVKDYLK PVAPTLRMTR LAFGLPMGSE LEYADEVTLA RALEARQEL 199
    Length:199
    Mass (Da):22,294
    Last modified:March 7, 2006 - v1
    Checksum:i6B63382E7166FB66
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000240 Genomic DNA. Translation: ABD03814.1.
    RefSeqiWP_011434433.1. NC_007776.1.
    YP_479077.1. NC_007776.1.

    Genome annotation databases

    EnsemblBacteriaiABD03814; ABD03814; CYB_2895.
    GeneIDi3900597.
    KEGGicyb:CYB_2895.
    PATRICi23808162. VBISynSp29577_2901.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000240 Genomic DNA. Translation: ABD03814.1 .
    RefSeqi WP_011434433.1. NC_007776.1.
    YP_479077.1. NC_007776.1.

    3D structure databases

    ProteinModelPortali Q2JH53.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 321332.CYB_2895.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABD03814 ; ABD03814 ; CYB_2895 .
    GeneIDi 3900597.
    KEGGi cyb:CYB_2895.
    PATRICi 23808162. VBISynSp29577_2901.

    Phylogenomic databases

    eggNOGi COG0353.
    HOGENOMi HOG000103272.
    KOi K06187.
    OMAi NECEICL.
    OrthoDBi EOG62NX85.

    Enzyme and pathway databases

    BioCyci SSP321332:GH1B-2895-MONOMER.

    Family and domain databases

    HAMAPi MF_00017. RecR.
    InterProi IPR000093. DNA_Rcmb_RecR.
    IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
    IPR023627. Rcmb_RecR.
    IPR023628. Rcmb_RecR_C4-type_Zn.
    IPR015967. Rcmb_RecR_CS.
    IPR006171. Toprim_domain.
    [Graphical view ]
    Pfami PF02132. RecR. 1 hit.
    PF13662. Toprim_4. 1 hit.
    [Graphical view ]
    SMARTi SM00278. HhH1. 1 hit.
    SM00493. TOPRIM. 1 hit.
    [Graphical view ]
    SUPFAMi SSF111304. SSF111304. 1 hit.
    TIGRFAMsi TIGR00615. recR. 1 hit.
    PROSITEi PS01300. RECR. 1 hit.
    PS50880. TOPRIM. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
      Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
      ISME J. 1:703-713(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JA-2-3B'a(2-13).

    Entry informationi

    Entry nameiRECR_SYNJB
    AccessioniPrimary (citable) accession number: Q2JH53
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 18, 2008
    Last sequence update: March 7, 2006
    Last modified: October 1, 2014
    This is version 66 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3