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Protein

Recombination protein RecR

Gene

recR

Organism
Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri56 – 7116C4-typeUniRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. DNA recombination Source: UniProtKB-HAMAP
  2. DNA repair Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA recombination, DNA repair

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciSSP321332:GH1B-2895-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Recombination protein RecRUniRule annotation
Gene namesi
Name:recRUniRule annotation
Ordered Locus Names:CYB_2895
OrganismiSynechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
Taxonomic identifieri321332 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000001938: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 199199Recombination protein RecRPRO_0000322960Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi321332.CYB_2895.

Structurei

3D structure databases

ProteinModelPortaliQ2JH53.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini79 – 17496ToprimUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RecR family.UniRule annotation
Contains 1 Toprim domain.UniRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri56 – 7116C4-typeUniRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiCOG0353.
HOGENOMiHOG000103272.
KOiK06187.
OMAiDVMAIEN.
OrthoDBiEOG62NX85.

Family and domain databases

HAMAPiMF_00017. RecR.
InterProiIPR000093. DNA_Rcmb_RecR.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023627. Rcmb_RecR.
IPR023628. Rcmb_RecR_C4-type_Zn.
IPR015967. Rcmb_RecR_CS.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF02132. RecR. 1 hit.
PF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTiSM00278. HhH1. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF111304. SSF111304. 1 hit.
TIGRFAMsiTIGR00615. recR. 1 hit.
PROSITEiPS01300. RECR. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2JH53-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYTRPLARLI EELQRLPGIG SKTAQRLALH LINRPAGEIE ALAKALLEAK
60 70 80 90 100
QTVRHCSICF NWSAEDPCEI CRSPQRDPSL WCVVADVKDL IAMERTREFK
110 120 130 140 150
GLYHVLGGLI SPMNGIGVDQ LHIRELVARV AREKPQELIF AISPSVEGEV
160 170 180 190
TMHVVKDYLK PVAPTLRMTR LAFGLPMGSE LEYADEVTLA RALEARQEL
Length:199
Mass (Da):22,294
Last modified:March 7, 2006 - v1
Checksum:i6B63382E7166FB66
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000240 Genomic DNA. Translation: ABD03814.1.
RefSeqiWP_011434433.1. NC_007776.1.
YP_479077.1. NC_007776.1.

Genome annotation databases

EnsemblBacteriaiABD03814; ABD03814; CYB_2895.
GeneIDi3900597.
KEGGicyb:CYB_2895.
PATRICi23808162. VBISynSp29577_2901.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000240 Genomic DNA. Translation: ABD03814.1.
RefSeqiWP_011434433.1. NC_007776.1.
YP_479077.1. NC_007776.1.

3D structure databases

ProteinModelPortaliQ2JH53.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi321332.CYB_2895.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD03814; ABD03814; CYB_2895.
GeneIDi3900597.
KEGGicyb:CYB_2895.
PATRICi23808162. VBISynSp29577_2901.

Phylogenomic databases

eggNOGiCOG0353.
HOGENOMiHOG000103272.
KOiK06187.
OMAiDVMAIEN.
OrthoDBiEOG62NX85.

Enzyme and pathway databases

BioCyciSSP321332:GH1B-2895-MONOMER.

Family and domain databases

HAMAPiMF_00017. RecR.
InterProiIPR000093. DNA_Rcmb_RecR.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR023627. Rcmb_RecR.
IPR023628. Rcmb_RecR_C4-type_Zn.
IPR015967. Rcmb_RecR_CS.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF02132. RecR. 1 hit.
PF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTiSM00278. HhH1. 1 hit.
SM00493. TOPRIM. 1 hit.
[Graphical view]
SUPFAMiSSF111304. SSF111304. 1 hit.
TIGRFAMsiTIGR00615. recR. 1 hit.
PROSITEiPS01300. RECR. 1 hit.
PS50880. TOPRIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
    Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
    ISME J. 1:703-713(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JA-2-3B'a(2-13).

Entry informationi

Entry nameiRECR_SYNJB
AccessioniPrimary (citable) accession number: Q2JH53
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 18, 2008
Last sequence update: March 7, 2006
Last modified: January 7, 2015
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.