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Q2JH34 (Q2JH34_FRASC) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 1 HAMAP MF_00163
Short name=PDF 1 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 1 HAMAP MF_00163
Gene names
Name:def1 HAMAP MF_00163
Ordered Locus Names:Francci3_0014
OrganismFrankia sp. (strain CcI3) [Complete proteome] [HAMAP] EMBL ABD09408.1
Taxonomic identifier106370 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Frankiaceae › Frankia

Protein attributes

Sequence length230 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1851 By similarity HAMAP MF_00163
Metal binding1421Iron By similarity HAMAP MF_00163
Metal binding1841Iron By similarity HAMAP MF_00163
Metal binding1881Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
Q2JH34 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: 9BA099A009972BD5

FASTA23025,639
        10         20         30         40         50         60 
MLAMASRLTR SDEKDEKDEK IDRRVRVLGE PVDSYPQLPP EVGRGSIRRI TVVGEPVLHR 

        70         80         90        100        110        120 
PCKKITEFGT AELAALIDDM FTTMYGAEGV GLAANQIDVD AAVFVYDCTD EDGVRHVGHL 

       130        140        150        160        170        180 
VNPVLEEAPP AERRLVKGDE GCLSVPGAYM EVARLEHAAV RGQDQHGAPL RLEGTGYFAR 

       190        200        210        220        230 
CLQHETDHLY GSLYLDRLSS RGRKKALREM EERTEEIFAR RVEVAARLGR

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000249 Genomic DNA. Translation: ABD09408.1.
RefSeqYP_479137.1. NC_007777.1.

3D structure databases

ProteinModelPortalQ2JH34.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ2JH34.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3902961.
GenomeReviewsGene locus Francci3_0014 in contig CP000249_GR.
KEGGfra:Francci3_0014.
PATRIC21922758. VBIFraSp10456_0015.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMATWMPGED.
PhylomeDBQ2JH34.
ProtClustDBCLSK520508.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ2JH34_FRASC
AccessionPrimary (citable) accession number: Q2JH34
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: December 14, 2011
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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