Q2JFK0 (Y558_FRASC) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0234 protein Francci3_0558

Gene names

Ordered Locus Names:

Francci3_0558

Organism

Frankia sp. (strain CcI3) [Complete proteome] [HAMAP]

Taxonomic identifier

106370 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Frankiaceae › Frankia

Protein attributes

Sequence length	162 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the UPF0234 family.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 162	162	UPF0234 protein Francci3_0558 HAMAP MF_00632		PRO_0000261937

Sequences

	Sequence		Length	Mass (Da)
	Q2JFK0 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: B0364C28D18F9E9C	FASTA	162	18,100
	10 20 30 40 50 60 MADPSFDIVS KVDAQEIDNA VNQTVKEIRT RFDFRDTGAS ATLSGESILL VANTDERVKA 70 80 90 100 110 120 VLDVLQEKFV KRGISLKALT FDEPKPSGKE FRLPVTVQQG IAEDKAKAIA KKIRTDGPKG 130 140 150 160 VQAQIQGDQL RVTGKKRDDL QRVIQILKTE DFEVPLQFVN YR

References

[1]

"Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography." Normand P., Lapierre P., Tisa L.S., Gogarten J.P., Alloisio N., Bagnarol E., Bassi C.A., Berry A.M., Bickhart D.M., Choisne N., Couloux A., Cournoyer B., Cruveiller S., Daubin V., Demange N., Francino M.P., Goltsman E., Huang Y. , Kopp O.R., Labarre L., Lapidus A., Lavire C., Marechal J., Martinez M., Mastronunzio J.E., Mullin B.C., Niemann J., Pujic P., Rawnsley T., Rouy Z., Schenowitz C., Sellstedt A., Tavares F., Tomkins J.P., Vallenet D., Valverde C., Wall L.G., Wang Y., Medigue C., Benson D.R. Genome Res. 17:7-15(2007) [PubMed: 17151343] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CcI3.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000249 Genomic DNA. Translation: ABD09942.1.
RefSeq	YP_479671.1. NC_007777.1.
3D structure databases
ProteinModelPortal	Q2JFK0.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2JFK0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3904209.
GenomeReviews	Gene locus Francci3_0558 in contig CP000249_GR.
KEGG	fra:Francci3_0558.
PATRIC	21923968. VBIFraSp10456_0613.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1666.
HOGENOM	HBG290634.
OMA	LQFTNYR.
PhylomeDB	Q2JFK0.
ProtClustDB	PRK05412.
Enzyme and pathway databases
BioCyc	FSP106370:FRANCCI3_0558-MONOMER.
Family and domain databases
HAMAP	MF_00632. UPF0234. [Tree]
InterPro	IPR007551. DUF520. [Graphical view]
KO	K09767.
Pfam	PF04461. DUF520. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y558_FRASC

Accession

Primary (citable) accession number: Q2JFK0

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 28, 2006
Last sequence update:	March 7, 2006
Last modified:	January 25, 2012
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program