Q2J6Y9 (Q2J6Y9_FRASC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNAse III EMBL ABD12953.1
EC=3.1.26.3 EMBL ABD12953.1

Gene names

Ordered Locus Names:

Francci3_3601

Organism

Frankia sp. (strain CcI3) [Complete proteome] [HAMAP] EMBL ABD12953.1

Taxonomic identifier

106370 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Frankiaceae › Frankia

Protein attributes

Sequence length	270 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

Ontologies

Keywords
Molecular function	Hydrolase EMBL ABD12953.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	RNA processing Inferred from electronic annotation. Source: InterPro rRNA catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	double-stranded RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease III activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q2J6Y9 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: 97ABEED4124A2EBF	FASTA	270	28,315
	10 20 30 40 50 60 MTRQLPPPPP RDGLIEVLEV AIDPELLDRA LTHRSYAYEK GGLPTNERLE FLGDAVLGLV 70 80 90 100 110 120 VTAALFIRHP DLPEGQLAKQ RASVVNMRAL ADVARGIGPT GLGPYLLLGR GEETTGGRDK 130 140 150 160 170 180 ASILADTLEA IIGAVYLSSG LDVASGFVHR LFDPLLDEAA GRGAGLDWKT SLQEQTAVLA 190 200 210 220 230 240 LGPPEYIVEE AGPDHAKRFT AYARIAGEPL GEGEGGSKKE AEQRAAAAAF AVLEERSALG 250 260 270 REDGSGADVA GGNHEKSAVG SLDHDQVSGL

References

[1]

"Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography." Normand P., Lapierre P., Tisa L.S., Gogarten J.P., Alloisio N., Bagnarol E., Bassi C.A., Berry A.M., Bickhart D.M., Choisne N., Couloux A., Cournoyer B., Cruveiller S., Daubin V., Demange N., Francino M.P., Goltsman E., Huang Y. , Kopp O.R., Labarre L., Lapidus A., Lavire C., Marechal J., Martinez M., Mastronunzio J.E., Mullin B.C., Niemann J., Pujic P., Rawnsley T., Rouy Z., Schenowitz C., Sellstedt A., Tavares F., Tomkins J.P., Vallenet D., Valverde C., Wall L.G., Wang Y., Medigue C., Benson D.R. Genome Res. 17:7-15(2007) [PubMed: 17151343] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000249 Genomic DNA. Translation: ABD12953.1.
RefSeq	YP_482682.1. NC_007777.1.
3D structure databases
ProteinModelPortal	Q2J6Y9.
SMR	Q2J6Y9. Positions 11-159.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2J6Y9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3904155.
GenomeReviews	Gene locus Francci3_3601 in contig CP000249_GR.
KEGG	fra:Francci3_3601.
PATRIC	21930636. VBIFraSp10456_3928.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0571.
HOGENOM	HBG744556.
OMA	PDHARTF.
PhylomeDB	Q2J6Y9.
ProtClustDB	PRK00102.
Family and domain databases
HAMAP	MF_00104. RNase_III. [Tree]
InterPro	IPR001159. Ds-RNA-bd. IPR014720. dsRNA-bd-like. IPR000999. RNase_III. IPR011907. RNase_III_bac. [Graphical view]
Gene3D	G3DSA:3.30.160.20. dsRNA-bd-like. 1 hit. G3DSA:1.10.1520.10. RNase_III. 1 hit.
KO	K03685.
PANTHER	PTHR11207. PTHR11207. 1 hit.
Pfam	PF00035. dsrm. 1 hit. PF00636. Ribonuclease_3. 1 hit. [Graphical view]
SMART	SM00358. DSRM. 1 hit. SM00535. RIBOc. 1 hit. [Graphical view]
SUPFAM	SSF69065. RNase_III. 1 hit.
TIGRFAMs	TIGR02191. RNaseIII. 1 hit.
PROSITE	PS50137. DS_RBD. 1 hit. PS00517. RNASE_3_1. 1 hit. PS50142. RNASE_3_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q2J6Y9_FRASC

Accession

Primary (citable) accession number: Q2J6Y9

Entry history

Integrated into UniProtKB/TrEMBL:	March 7, 2006
Last sequence update:	March 7, 2006
Last modified:	January 25, 2012
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)