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Q2J6Q9

- GLGB_FRASC

UniProt

Q2J6Q9 - GLGB_FRASC

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Frankia sp. (strain CcI3)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 1 (07 Mar 2006)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei490 – 4901NucleophileUniRule annotation
    Active sitei543 – 5431Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciFSP106370:GI1F-3729-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiCBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
    Alpha-(1->4)-glucan branching enzymeUniRule annotation
    Glycogen branching enzymeUniRule annotation
    Short name:
    BEUniRule annotation
    Gene namesi
    Name:glgBUniRule annotation
    Ordered Locus Names:Francci3_3681
    OrganismiFrankia sp. (strain CcI3)
    Taxonomic identifieri106370 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeFrankiaceaeFrankia
    ProteomesiUP000001937: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 8128121,4-alpha-glucan branching enzyme GlgBPRO_0000260658Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi106370.Francci3_3681.

    Structurei

    3D structure databases

    ProteinModelPortaliQ2J6Q9.
    SMRiQ2J6Q9. Positions 201-811.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    KOiK00700.
    OMAiISEGRHE.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q2J6Q9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNNGDVNNGT ARTGRLATGL APDRPNPRGA ATAVRNGGGR VALADRDASS    50
    ASAQPGQTAD DPAVPSAPPS APPSALPADP PAVAPAVSVD LPYDDLERLV 100
    SGAHHDPHAL LGAHPHPGSD ATVVRVLRPD ARAVTVLVGP ARYPATRLHS 150
    GGVFGVAVPG MLPDYRIEVT YPDGPYLIDD PYRHLPTLGE MDLHLIIEGR 200
    HEQLWKVLGA HPRALTTPGG ATVTGVSFAV WAPSARGVRL VGDFDFWDGR 250
    AFPMRSLGRS GIWELFVPGA GTGARYKYEI LGFDGIWRQK ADPLAFHTEV 300
    PPATASVVFA SDFTWNDGAW LDRRARTAWR TEPVSVYEVH LGSWRRGLSY 350
    RELAEELTAY VVENGFTHVE MLPVAEHPFG GSWGYQVSAY YAPTARFGSP 400
    DEFRHLVDTL HRAGIGVIVD WVPAHFPRDT WALGRFDGTP LYEHPDPRRG 450
    EQPDWGTYVF DLGRPEVRNF LVANALYWFE EFHIDGLRVD AVASMLYLDY 500
    SRPEGGWLPN IHGGRENLDA VSFLQETNAT VYRRFPGAMM IAEESTAWPG 550
    VTRPTHLGGL GFGFKWNMGW MHDTLDYNSR LPIHRMYHHH QMTFSMVYAY 600
    SENFILPFSH DEVVHGKGSL LRKMPGDRWA QLANLRALLA YMWAHPGKKL 650
    LFMGCEFAQD NEWNESASLE WPLLDDPAHA GVADLVRDLN GLYRTVPALY 700
    QHDADPAGFS WIDANDAENN VFSFLRWSGE DPAGGVLACV TNFAGIGHEG 750
    YRIGLPFPGR WREILNTDGY RYGGGNIGNL GSVQAVEEPH HGLDASATLT 800
    LPPLGAIWLS PA 812
    Length:812
    Mass (Da):89,229
    Last modified:March 7, 2006 - v1
    Checksum:i7DA0746ADF835D01
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000249 Genomic DNA. Translation: ABD13033.1.
    RefSeqiYP_482762.1. NC_007777.1.

    Genome annotation databases

    EnsemblBacteriaiABD13033; ABD13033; Francci3_3681.
    GeneIDi3905365.
    KEGGifra:Francci3_3681.
    PATRICi21930812. VBIFraSp10456_4011.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000249 Genomic DNA. Translation: ABD13033.1 .
    RefSeqi YP_482762.1. NC_007777.1.

    3D structure databases

    ProteinModelPortali Q2J6Q9.
    SMRi Q2J6Q9. Positions 201-811.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 106370.Francci3_3681.

    Protein family/group databases

    CAZyi CBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABD13033 ; ABD13033 ; Francci3_3681 .
    GeneIDi 3905365.
    KEGGi fra:Francci3_3681.
    PATRICi 21930812. VBIFraSp10456_4011.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    KOi K00700.
    OMAi ISEGRHE.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci FSP106370:GI1F-3729-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CcI3.

    Entry informationi

    Entry nameiGLGB_FRASC
    AccessioniPrimary (citable) accession number: Q2J6Q9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: March 7, 2006
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3