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Q2IYX6 (Q2IYX6_RHOP2) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP dependent DNA ligase, central EMBL ABD06584.1
Gene names
Ordered Locus Names:RPB_1876
OrganismRhodopseudomonas palustris (strain HaA2) [Complete proteome] [HAMAP] EMBL ABD06584.1
Taxonomic identifier316058 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas ›

Protein attributes

Sequence length914 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABD06584.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q2IYX6 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: B25DC9C80FE85235

FASTA914100,253
        10         20         30         40         50         60 
MAASKTLTLY RNKRDFEQTA EPRGDAEVVP SKRRRFVIQK HDATRLHYDL RLEYDGVFKS 

        70         80         90        100        110        120 
WAVTRGPSLD PRDKRLAVEV EDHPLDYGDF EGTIPKGQYG GGTVQLWDRG YWDCDDPERG 

       130        140        150        160        170        180 
FKTGDLKFTL DGEKVHGSWV LVRMRHDRNG GKRTNWLLIK HRDDDAREGK ANDILDEDRS 

       190        200        210        220        230        240 
VASGRTMKQI AEGKGRAPKP FMTGKVARVK ADAVWDSNKG LAADARAADD AGKAARPKRA 

       250        260        270        280        290        300 
AAKKAPKKAA AKSRTTKTTS RATRKPVKVA AMPDFIPPQL CTSVERPPGS DGWRHEIKFD 

       310        320        330        340        350        360 
GYRMQLRIAH GEAALRTRKG LDWTAKFRAI ADEAAGLPDA IIDTEIVALD HHGHPDFAAL 

       370        380        390        400        410        420 
QAALSDGDSD KLICFAFDLL YADGEDLRSL PLSERKQRLQ DLLKAARGRR KEGLIRYVEH 

       430        440        450        460        470        480 
FETGGDAILQ SACKLSLEGI VSKKLDAPYR SGRSDNWTKA KCRAGHEVVI GGWKTTAGKF 

       490        500        510        520        530        540 
RSLMVGVQSD DRAGNHHLAY VGLVGTGFGQ DVVKRILPEL KARASKDNPF AGENAPRKTS 

       550        560        570        580        590        600 
DVNWVTPDLV AEIEFAGFTG AGMVRQAAFK GLRADKPADE VVAEKPAQVG IARPKPKRGT 

       610        620        630        640        650        660 
KAAPAVRKVA SAASRAEVMG ISISKPDKVL WPASEISEAI TKLDLAHYYE AVGDWLIAHI 

       670        680        690        700        710        720 
KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIDLAKVSGD RKPYVQIDRV EGLIAVAQIG 

       730        740        750        760        770        780 
GLELHPWNCA PGAYDVPGRL VFDLDPAPDV GFDDVVAAAR EMKDRLETIG LSTFCKTTGG 

       790        800        810        820        830        840 
KGLHVVVPLQ PKDDVDWKQA KIFAQTVCAQ MADDSPERYL LNMSKQQRKG KIFLDYLRND 

       850        860        870        880        890        900 
RMSTAVAALS PRAREGATVS MPVTWSQVKA GLDPKRFTLG TVPALLRKTK AWADYDESAA 

       910 
PLRAALEALA SSGA

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References

[1]"Complete sequence of Rhodopseudomonas palustris HaA2."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Pelletier D.A. expand/collapse author list , Kyrpides N., Anderson I., Oda Y., Harwood C.S., Richardson P.
Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HaA2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000250 Genomic DNA. Translation: ABD06584.1.
RefSeqYP_485495.1. NC_007778.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING316058.RPB_1876.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD06584; ABD06584; RPB_1876.
GeneID3908071.
KEGGrpb:RPB_1876.
PATRIC23298357. VBIRhoPal125544_1972.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycRPAL316058:GHF1-1936-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2IYX6_RHOP2
AccessionPrimary (citable) accession number: Q2IYX6
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: May 1, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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