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Q2IYX6

- Q2IYX6_RHOP2

UniProt

Q2IYX6 - Q2IYX6_RHOP2

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Protein
Submitted name:

ATP dependent DNA ligase, central

Gene

RPB_1876

Organism
Rhodopseudomonas palustris (strain HaA2)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL316058:GHF1-1896-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligase, centralImported
Gene namesi
Ordered Locus Names:RPB_1876Imported
OrganismiRhodopseudomonas palustris (strain HaA2)Imported
Taxonomic identifieri316058 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000008809: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316058.RPB_1876.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2IYX6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAASKTLTLY RNKRDFEQTA EPRGDAEVVP SKRRRFVIQK HDATRLHYDL
60 70 80 90 100
RLEYDGVFKS WAVTRGPSLD PRDKRLAVEV EDHPLDYGDF EGTIPKGQYG
110 120 130 140 150
GGTVQLWDRG YWDCDDPERG FKTGDLKFTL DGEKVHGSWV LVRMRHDRNG
160 170 180 190 200
GKRTNWLLIK HRDDDAREGK ANDILDEDRS VASGRTMKQI AEGKGRAPKP
210 220 230 240 250
FMTGKVARVK ADAVWDSNKG LAADARAADD AGKAARPKRA AAKKAPKKAA
260 270 280 290 300
AKSRTTKTTS RATRKPVKVA AMPDFIPPQL CTSVERPPGS DGWRHEIKFD
310 320 330 340 350
GYRMQLRIAH GEAALRTRKG LDWTAKFRAI ADEAAGLPDA IIDTEIVALD
360 370 380 390 400
HHGHPDFAAL QAALSDGDSD KLICFAFDLL YADGEDLRSL PLSERKQRLQ
410 420 430 440 450
DLLKAARGRR KEGLIRYVEH FETGGDAILQ SACKLSLEGI VSKKLDAPYR
460 470 480 490 500
SGRSDNWTKA KCRAGHEVVI GGWKTTAGKF RSLMVGVQSD DRAGNHHLAY
510 520 530 540 550
VGLVGTGFGQ DVVKRILPEL KARASKDNPF AGENAPRKTS DVNWVTPDLV
560 570 580 590 600
AEIEFAGFTG AGMVRQAAFK GLRADKPADE VVAEKPAQVG IARPKPKRGT
610 620 630 640 650
KAAPAVRKVA SAASRAEVMG ISISKPDKVL WPASEISEAI TKLDLAHYYE
660 670 680 690 700
AVGDWLIAHI KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIDLAKVSGD
710 720 730 740 750
RKPYVQIDRV EGLIAVAQIG GLELHPWNCA PGAYDVPGRL VFDLDPAPDV
760 770 780 790 800
GFDDVVAAAR EMKDRLETIG LSTFCKTTGG KGLHVVVPLQ PKDDVDWKQA
810 820 830 840 850
KIFAQTVCAQ MADDSPERYL LNMSKQQRKG KIFLDYLRND RMSTAVAALS
860 870 880 890 900
PRAREGATVS MPVTWSQVKA GLDPKRFTLG TVPALLRKTK AWADYDESAA
910
PLRAALEALA SSGA
Length:914
Mass (Da):100,253
Last modified:March 7, 2006 - v1
Checksum:iB25DC9C80FE85235
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000250 Genomic DNA. Translation: ABD06584.1.
RefSeqiYP_485495.1. NC_007778.1.

Genome annotation databases

EnsemblBacteriaiABD06584; ABD06584; RPB_1876.
GeneIDi3908071.
KEGGirpb:RPB_1876.
PATRICi23298357. VBIRhoPal125544_1972.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000250 Genomic DNA. Translation: ABD06584.1 .
RefSeqi YP_485495.1. NC_007778.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316058.RPB_1876.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABD06584 ; ABD06584 ; RPB_1876 .
GeneIDi 3908071.
KEGGi rpb:RPB_1876.
PATRICi 23298357. VBIRhoPal125544_1972.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RPAL316058:GHF1-1896-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HaA2Imported.

Entry informationi

Entry nameiQ2IYX6_RHOP2
AccessioniPrimary (citable) accession number: Q2IYX6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: October 29, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3