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Q2IYX6

- Q2IYX6_RHOP2

UniProt

Q2IYX6 - Q2IYX6_RHOP2

Protein
Submitted name:

ATP dependent DNA ligase, central

Gene

RPB_1876

Organism
Rhodopseudomonas palustris (strain HaA2)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (07 Mar 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRPAL316058:GHF1-1896-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligase, centralImported
    Gene namesi
    Ordered Locus Names:RPB_1876Imported
    OrganismiRhodopseudomonas palustris (strain HaA2)Imported
    Taxonomic identifieri316058 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000008809: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi316058.RPB_1876.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q2IYX6-1 [UniParc]FASTAAdd to Basket

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    MAASKTLTLY RNKRDFEQTA EPRGDAEVVP SKRRRFVIQK HDATRLHYDL    50
    RLEYDGVFKS WAVTRGPSLD PRDKRLAVEV EDHPLDYGDF EGTIPKGQYG 100
    GGTVQLWDRG YWDCDDPERG FKTGDLKFTL DGEKVHGSWV LVRMRHDRNG 150
    GKRTNWLLIK HRDDDAREGK ANDILDEDRS VASGRTMKQI AEGKGRAPKP 200
    FMTGKVARVK ADAVWDSNKG LAADARAADD AGKAARPKRA AAKKAPKKAA 250
    AKSRTTKTTS RATRKPVKVA AMPDFIPPQL CTSVERPPGS DGWRHEIKFD 300
    GYRMQLRIAH GEAALRTRKG LDWTAKFRAI ADEAAGLPDA IIDTEIVALD 350
    HHGHPDFAAL QAALSDGDSD KLICFAFDLL YADGEDLRSL PLSERKQRLQ 400
    DLLKAARGRR KEGLIRYVEH FETGGDAILQ SACKLSLEGI VSKKLDAPYR 450
    SGRSDNWTKA KCRAGHEVVI GGWKTTAGKF RSLMVGVQSD DRAGNHHLAY 500
    VGLVGTGFGQ DVVKRILPEL KARASKDNPF AGENAPRKTS DVNWVTPDLV 550
    AEIEFAGFTG AGMVRQAAFK GLRADKPADE VVAEKPAQVG IARPKPKRGT 600
    KAAPAVRKVA SAASRAEVMG ISISKPDKVL WPASEISEAI TKLDLAHYYE 650
    AVGDWLIAHI KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIDLAKVSGD 700
    RKPYVQIDRV EGLIAVAQIG GLELHPWNCA PGAYDVPGRL VFDLDPAPDV 750
    GFDDVVAAAR EMKDRLETIG LSTFCKTTGG KGLHVVVPLQ PKDDVDWKQA 800
    KIFAQTVCAQ MADDSPERYL LNMSKQQRKG KIFLDYLRND RMSTAVAALS 850
    PRAREGATVS MPVTWSQVKA GLDPKRFTLG TVPALLRKTK AWADYDESAA 900
    PLRAALEALA SSGA 914
    Length:914
    Mass (Da):100,253
    Last modified:March 7, 2006 - v1
    Checksum:iB25DC9C80FE85235
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000250 Genomic DNA. Translation: ABD06584.1.
    RefSeqiWP_011440772.1. NC_007778.1.
    YP_485495.1. NC_007778.1.

    Genome annotation databases

    EnsemblBacteriaiABD06584; ABD06584; RPB_1876.
    GeneIDi3908071.
    KEGGirpb:RPB_1876.
    PATRICi23298357. VBIRhoPal125544_1972.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000250 Genomic DNA. Translation: ABD06584.1 .
    RefSeqi WP_011440772.1. NC_007778.1.
    YP_485495.1. NC_007778.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316058.RPB_1876.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABD06584 ; ABD06584 ; RPB_1876 .
    GeneIDi 3908071.
    KEGGi rpb:RPB_1876.
    PATRICi 23298357. VBIRhoPal125544_1972.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci RPAL316058:GHF1-1896-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HaA2Imported.

    Entry informationi

    Entry nameiQ2IYX6_RHOP2
    AccessioniPrimary (citable) accession number: Q2IYX6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 7, 2006
    Last sequence update: March 7, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3