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Q2IYX6

- Q2IYX6_RHOP2

UniProt

Q2IYX6 - Q2IYX6_RHOP2

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Protein
Submitted name:

ATP dependent DNA ligase, central

Gene
RPB_1876
Organism
Rhodopseudomonas palustris (strain HaA2)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL316058:GHF1-1896-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligase, centralImported
Gene namesi
Ordered Locus Names:RPB_1876Imported
OrganismiRhodopseudomonas palustris (strain HaA2)Imported
Taxonomic identifieri316058 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000008809: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316058.RPB_1876.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2IYX6-1 [UniParc]FASTAAdd to Basket

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MAASKTLTLY RNKRDFEQTA EPRGDAEVVP SKRRRFVIQK HDATRLHYDL    50
RLEYDGVFKS WAVTRGPSLD PRDKRLAVEV EDHPLDYGDF EGTIPKGQYG 100
GGTVQLWDRG YWDCDDPERG FKTGDLKFTL DGEKVHGSWV LVRMRHDRNG 150
GKRTNWLLIK HRDDDAREGK ANDILDEDRS VASGRTMKQI AEGKGRAPKP 200
FMTGKVARVK ADAVWDSNKG LAADARAADD AGKAARPKRA AAKKAPKKAA 250
AKSRTTKTTS RATRKPVKVA AMPDFIPPQL CTSVERPPGS DGWRHEIKFD 300
GYRMQLRIAH GEAALRTRKG LDWTAKFRAI ADEAAGLPDA IIDTEIVALD 350
HHGHPDFAAL QAALSDGDSD KLICFAFDLL YADGEDLRSL PLSERKQRLQ 400
DLLKAARGRR KEGLIRYVEH FETGGDAILQ SACKLSLEGI VSKKLDAPYR 450
SGRSDNWTKA KCRAGHEVVI GGWKTTAGKF RSLMVGVQSD DRAGNHHLAY 500
VGLVGTGFGQ DVVKRILPEL KARASKDNPF AGENAPRKTS DVNWVTPDLV 550
AEIEFAGFTG AGMVRQAAFK GLRADKPADE VVAEKPAQVG IARPKPKRGT 600
KAAPAVRKVA SAASRAEVMG ISISKPDKVL WPASEISEAI TKLDLAHYYE 650
AVGDWLIAHI KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIDLAKVSGD 700
RKPYVQIDRV EGLIAVAQIG GLELHPWNCA PGAYDVPGRL VFDLDPAPDV 750
GFDDVVAAAR EMKDRLETIG LSTFCKTTGG KGLHVVVPLQ PKDDVDWKQA 800
KIFAQTVCAQ MADDSPERYL LNMSKQQRKG KIFLDYLRND RMSTAVAALS 850
PRAREGATVS MPVTWSQVKA GLDPKRFTLG TVPALLRKTK AWADYDESAA 900
PLRAALEALA SSGA 914
Length:914
Mass (Da):100,253
Last modified:March 7, 2006 - v1
Checksum:iB25DC9C80FE85235
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000250 Genomic DNA. Translation: ABD06584.1.
RefSeqiWP_011440772.1. NC_007778.1.
YP_485495.1. NC_007778.1.

Genome annotation databases

EnsemblBacteriaiABD06584; ABD06584; RPB_1876.
GeneIDi3908071.
KEGGirpb:RPB_1876.
PATRICi23298357. VBIRhoPal125544_1972.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000250 Genomic DNA. Translation: ABD06584.1 .
RefSeqi WP_011440772.1. NC_007778.1.
YP_485495.1. NC_007778.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316058.RPB_1876.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABD06584 ; ABD06584 ; RPB_1876 .
GeneIDi 3908071.
KEGGi rpb:RPB_1876.
PATRICi 23298357. VBIRhoPal125544_1972.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci RPAL316058:GHF1-1896-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HaA2Imported.

Entry informationi

Entry nameiQ2IYX6_RHOP2
AccessioniPrimary (citable) accession number: Q2IYX6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: September 3, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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