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Protein
Submitted name:

ATP dependent DNA ligase, central

Gene

RPB_1876

Organism
Rhodopseudomonas palustris (strain HaA2)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciRPAL316058:G1G5V-1903-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligase, centralImported
Gene namesi
Ordered Locus Names:RPB_1876Imported
OrganismiRhodopseudomonas palustris (strain HaA2)Imported
Taxonomic identifieri316058 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000008809 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316058.RPB_1876

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini375 – 461DNA_LIGASE_A3InterPro annotationAdd BLAST87

Phylogenomic databases

eggNOGiENOG4105DQE Bacteria
COG1793 LUCA
COG3285 LUCA
HOGENOMiHOG000222509
KOiK01971
OMAiAMMVEDH
OrthoDBiPOG091H0AZ9

Family and domain databases

CDDicd04862 PaeLigD_Pol_like, 1 hit
InterProiView protein in InterPro
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR014146 LigD_ligase_dom
IPR014144 LigD_PE_domain
IPR014145 LigD_pol_dom
IPR012340 NA-bd_OB-fold
IPR014143 NHEJ_ligase_prk
IPR033651 PaeLigD_Pol-like
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF13298 LigD_N, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR02777 LigD_PE_dom, 1 hit
TIGR02778 ligD_pol, 1 hit
TIGR02779 NHEJ_ligase_lig, 1 hit
TIGR02776 NHEJ_ligase_prk, 1 hit
PROSITEiView protein in PROSITE
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

Q2IYX6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAASKTLTLY RNKRDFEQTA EPRGDAEVVP SKRRRFVIQK HDATRLHYDL
60 70 80 90 100
RLEYDGVFKS WAVTRGPSLD PRDKRLAVEV EDHPLDYGDF EGTIPKGQYG
110 120 130 140 150
GGTVQLWDRG YWDCDDPERG FKTGDLKFTL DGEKVHGSWV LVRMRHDRNG
160 170 180 190 200
GKRTNWLLIK HRDDDAREGK ANDILDEDRS VASGRTMKQI AEGKGRAPKP
210 220 230 240 250
FMTGKVARVK ADAVWDSNKG LAADARAADD AGKAARPKRA AAKKAPKKAA
260 270 280 290 300
AKSRTTKTTS RATRKPVKVA AMPDFIPPQL CTSVERPPGS DGWRHEIKFD
310 320 330 340 350
GYRMQLRIAH GEAALRTRKG LDWTAKFRAI ADEAAGLPDA IIDTEIVALD
360 370 380 390 400
HHGHPDFAAL QAALSDGDSD KLICFAFDLL YADGEDLRSL PLSERKQRLQ
410 420 430 440 450
DLLKAARGRR KEGLIRYVEH FETGGDAILQ SACKLSLEGI VSKKLDAPYR
460 470 480 490 500
SGRSDNWTKA KCRAGHEVVI GGWKTTAGKF RSLMVGVQSD DRAGNHHLAY
510 520 530 540 550
VGLVGTGFGQ DVVKRILPEL KARASKDNPF AGENAPRKTS DVNWVTPDLV
560 570 580 590 600
AEIEFAGFTG AGMVRQAAFK GLRADKPADE VVAEKPAQVG IARPKPKRGT
610 620 630 640 650
KAAPAVRKVA SAASRAEVMG ISISKPDKVL WPASEISEAI TKLDLAHYYE
660 670 680 690 700
AVGDWLIAHI KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIDLAKVSGD
710 720 730 740 750
RKPYVQIDRV EGLIAVAQIG GLELHPWNCA PGAYDVPGRL VFDLDPAPDV
760 770 780 790 800
GFDDVVAAAR EMKDRLETIG LSTFCKTTGG KGLHVVVPLQ PKDDVDWKQA
810 820 830 840 850
KIFAQTVCAQ MADDSPERYL LNMSKQQRKG KIFLDYLRND RMSTAVAALS
860 870 880 890 900
PRAREGATVS MPVTWSQVKA GLDPKRFTLG TVPALLRKTK AWADYDESAA
910
PLRAALEALA SSGA
Length:914
Mass (Da):100,253
Last modified:March 7, 2006 - v1
Checksum:iB25DC9C80FE85235
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000250 Genomic DNA Translation: ABD06584.1
RefSeqiWP_011440772.1, NC_007778.1

Genome annotation databases

EnsemblBacteriaiABD06584; ABD06584; RPB_1876
KEGGirpb:RPB_1876

Similar proteinsi

Entry informationi

Entry nameiQ2IYX6_RHOP2
AccessioniPrimary (citable) accession number: Q2IYX6
Entry historyiIntegrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: April 25, 2018
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health