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Q2IYK1 (Q2IYK1_RHOP2) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.3.2.4 EMBL ABD06709.1
Gene names
Ordered Locus Names:RPB_2001 EMBL ABD06709.1
OrganismRhodopseudomonas palustris (strain HaA2) [Complete proteome] [HAMAP] EMBL ABD06709.1
Taxonomic identifier316058 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length329 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. SAAS SAAS005905

Subcellular location

Cytoplasm By similarity SAAS SAAS005905.

Sequence similarities

Contains ATP-grasp domain. SAAS SAAS005905

Sequences

Sequence LengthMass (Da)Tools
Q2IYK1 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: FCE1D384D552401D

FASTA32934,917
        10         20         30         40         50         60 
MRQTILFGGT SKERLVSVAS AQALHAALPD AELWFWNDDD SVHAVTAEAL LAHARPFEEA 

        70         80         90        100        110        120 
FRPAGENIGP LERALDRAAI EQRLLVLGLH GGVAENGELQ AMCEMRGVPF TGSGAAASHL 

       130        140        150        160        170        180 
AFDKVAAKRF AAIAGVRAPA GIALAEAEAA LAAHGRLIAK PARDGSSYGL FFINAKQDLV 

       190        200        210        220        230        240 
AVRDAARSED YLIEPFVSGI EATCGVLEQA DGSLLALPPI EIVPADGGFD YTAKYLAKST 

       250        260        270        280        290        300 
QEICPGRFAP QISARIMEDA VKAHRVMGCR GYSRSDFIVV ADGPIFLETN TLPGLTKASL 

       310        320 
YPKALQAQGI AFVDFLHGQI ALAERGARR 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris HaA2."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Pelletier D.A. expand/collapse author list , Kyrpides N., Anderson I., Oda Y., Harwood C.S., Richardson P.
Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HaA2 EMBL ABD06709.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000250 Genomic DNA. Translation: ABD06709.1.
RefSeqYP_485620.1. NC_007778.1.

3D structure databases

ProteinModelPortalQ2IYK1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316058.RPB_2001.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD06709; ABD06709; RPB_2001.
GeneID3909507.
KEGGrpb:RPB_2001.
PATRIC23298607. VBIRhoPal125544_2097.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1181.
HOGENOMHOG000011592.
KOK01921.
OMAGELQAMC.
OrthoDBEOG6ND0KB.
ProtClustDBCLSK911593.

Enzyme and pathway databases

BioCycRPAL316058:GHF1-2023-MONOMER.
UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
SUPFAMSSF52440. SSF52440. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2IYK1_RHOP2
AccessionPrimary (citable) accession number: Q2IYK1
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: November 13, 2013
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)