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Q2IVT0 (Q2IVT0_RHOP2) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA topoisomerase IV subunit B EMBL ABD07680.1
EC=5.99.1.3 EMBL ABD07680.1
Gene names
Ordered Locus Names:RPB_2978
OrganismRhodopseudomonas palustris (strain HaA2) [Complete proteome] [HAMAP] EMBL ABD07680.1
Taxonomic identifier316058 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas

Protein attributes

Sequence length684 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionIsomerase EMBL ABD07680.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processDNA topological change

Inferred from electronic annotation. Source: InterPro

   Cellular componentchromosome

Inferred from electronic annotation. Source: InterPro

   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

DNA topoisomerase (ATP-hydrolyzing) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q2IVT0 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: 71D7D974EFBF2A15

FASTA68474,245
        10         20         30         40         50         60 
MAKALKASSK SKPASDLFGA AAKSGAPRAA AKPTGGAEAG YTAADIEVLE GLEPVRRRPG 

        70         80         90        100        110        120 
MYIGGTDEKA LHHLFAEVID NSMDEALAGH ATFIEVELGA DGYLTVSDNG RGIPVDPHPK 

       130        140        150        160        170        180 
FPKKSALEVI MCTLHAGGKF DSKVYETSGG LHGVGVSVVN ALSSLLEVEV ARGQQLYRMV 

       190        200        210        220        230        240 
FARGIPQGKL ESLGKINNRR GTRVRFKPDT DIFGAKAAFK PQRLFKMARS KAYLFGGVEI 

       250        260        270        280        290        300 
RWKCDPELLK GVEDVPPEDT FHFPGGLKDY LGAAIHADTL VHPDIFSGKS GRNGAHGACE 

       310        320        330        340        350        360 
WAVAWTADAD GFLSSYCNTV PTPDGGTHES GMRSALLRGL KDHAERVGQG KRASSITSED 

       370        380        390        400        410        420 
VMVGAAVMLS VFVREPEFQG QTKDRLATAE AQKIVEQAIK DPFDHWLSGN PVQANKLLDF 

       430        440        450        460        470        480 
VVERAEERLR RRQEKEISRK TAVKKLRLPG KLADCTNTAA EGSELFIVEG DSAGGSAKQA 

       490        500        510        520        530        540 
RDRKTQAVLP LRGKILNVAS ATKDKVVANA QLSDLMQAIG CGTGVNYREE DLRYARIIIM 

       550        560        570        580        590        600 
TDADVDGAHI ASLLITFFYR QMPKLIDEGH LYLAVPPLYR LTHGAKTVYA RDDAHKDELL 

       610        620        630        640        650        660 
KKEFNANAKV DVGRFKGLGE MMPAQLKETT MDPARRTLLR VSLLDIDRDG TADSVERLMG 

       670        680 
TKAEARFAFI SDKAEFASED LLDV

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris HaA2."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Pelletier D.A. expand/collapse author list , Kyrpides N., Anderson I., Oda Y., Harwood C.S., Richardson P.
Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HaA2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000250 Genomic DNA. Translation: ABD07680.1.
RefSeqYP_486591.1. NC_007778.1.

3D structure databases

ProteinModelPortalQ2IVT0.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ2IVT0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3910777.
GenomeReviewsGene locus RPB_2978 in contig CP000250_GR.
KEGGrpb:RPB_2978.
PATRIC23300719. VBIRhoPal125544_3135.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0187.
HOGENOMHBG304889.
OMAQARDKEF.
PhylomeDBQ2IVT0.
ProtClustDBPRK05559.

Enzyme and pathway databases

BioCycRPAL316058:RPB_2978-MONOMER.

Family and domain databases

InterProIPR003594. ATPase-like_ATP-bd.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR001241. Topo_IIA.
IPR013759. Topo_IIA_B/N_ab.
IPR002288. Topo_IIA_B_C.
IPR013506. Topo_IIA_bsu_dom2.
IPR013760. Topo_IIA_cen.
IPR018522. TopoIIA_CS.
IPR005737. TopoIV_B_Gneg.
[Graphical view]
Gene3DG3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit.
G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit.
G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KOK02622.
PfamPF00204. DNA_gyraseB. 1 hit.
PF00986. DNA_gyraseB_C. 1 hit.
PF02518. HATPase_c. 1 hit.
[Graphical view]
PRINTSPR00418. TPI2FAMILY.
SMARTSM00387. HATPase_c. 1 hit.
SM00433. TOP2c. 1 hit.
[Graphical view]
SUPFAMSSF55874. ATP_bd_ATPase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMsTIGR01055. ParE_Gneg. 1 hit.
PROSITEPS00177. TOPOISOMERASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ2IVT0_RHOP2
AccessionPrimary (citable) accession number: Q2IVT0
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: January 25, 2012
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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