Reviewed, UniProtKB/Swiss-Prot Q2ILE0 (TRMFO_ANADE)

Names and origin

Protein names

Recommended name:
    Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
    EC=2.1.1.74
Alternative name(s):
    Folate-dependent tRNA (uracil-5-)-methyltransferase
    Folate-dependent tRNA(M-5-U54)-methyltransferase

Gene names

Name:	trmFO
Ordered Locus Names:	Adeh_2697

Organism

Anaeromyxobacter dehalogenans (strain 2CP-C) [Complete proteome] [HAMAP]

Taxonomic identifier

290397 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Myxococcales › Cystobacterineae › Myxococcaceae › Anaeromyxobacter

Protein attributes

Sequence length	450 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs By similarity.
Catalytic activity	5,10-methylenetetrahydrofolate + tRNA containing uridine at position 54 + FADH2 = tetrahydrofolate + tRNA containing ribothymidine at position 54 + FAD. HAMAP MF_01037
Cofactor	FAD By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the mnmG family. TrmFO subfamily.

Ontologies

Keywords
Biological process	tRNA processing
Cellular component	Cytoplasm
Ligand	FAD Flavoprotein
Molecular function	Methyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tRNA processing Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	FAD binding Inferred from electronic annotation. Source: HAMAP methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) activity Inferred from electronic annotation. Source: EC tRNA (uracil-5-)-methyltransferase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 450	450	Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO HAMAP MF_01037		PRO_0000346317
Regions
	Nucleotide binding	10 – 15	6	FAD By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q2ILE0-1 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: C5C2BE25A871FDDD	FASTA	450	48,369
	10 20 30 40 50 60 MGDTRVTVIG GGLAGSEAAW QLARAGVAVE LVEMKPERRS PAHVLPGLAE LVCSNSLRSD 70 80 90 100 110 120 NPQNAVGLLH EELRRLGSLV LGCADATRVP AGDALAVDRE RFSEAVTARL SGHPGVRIVH 130 140 150 160 170 180 REVEDLPPPP ALAVIATGPL TGDALAARLA EATGGRLHFY DAIAPIVAAE SIDRSIAYAR 190 200 210 220 230 240 SRYGKGSGDD YLNLPLDEAQ YHAFVDALLQ GEKVPAHGFE EPRYFEGCLP IEVMAERGTE 250 260 270 280 290 300 VLAHGPLKPV GLEDPRTGRW PHAVVQLRRE DVEGTAWNLV GFQTRLTWPE QRRIFRAFLP 310 320 330 340 350 360 GLANAEFVRL GQIHRNTFVD APRVLAPDLS VRAAPHLFLA GQITGVEGYV ESAACGLMAA 370 380 390 400 410 420 RAVLDRLAER AFRPPPAATA LGALHRHLTG EAHPPGYDYQ PSNVVFALFP PLTGRHRGKA 430 440 450 GRKEAHVERA RKELAPWIDT APPPAVPAAG

References

[1]

"Complete sequence of Anaeromyxobacter dehalogenans 2CP-C." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M. , Kyrpides N., Anderson I., Sanford R.A., Ritalahti K.M., Thomas H.S., Kirby J.R., Zhulin I.B., Loeffler F.E., Richardson P. Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000251 Genomic DNA. Translation: ABC82467.1.
RefSeq	YP_465904.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	3890293.
GenomeReviews	Gene locus Adeh_2697 in contig CP000251_GR.
KEGG	ade:Adeh_2697.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q2ILE0.
OMA	Q2ILE0. MKPVGLT.
Enzyme and pathway databases
BioCyc	ADEH290397:ADEH_2697-MON.
Family and domain databases
HAMAP	MF_01037. [Tree]
InterPro	IPR013027. FAD_pyr_nucl-diS_OxRdtase. IPR004417. Gid. IPR002218. GIDA-rel. IPR016040. NAD(P)-bd_dom. [Graphical view]
Gene3D	G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
PANTHER	PTHR11806. GIDA. 1 hit.
Pfam	PF01134. GIDA. 1 hit. [Graphical view]
PRINTS	PR00368. FADPNR.
ProDom	PD003738. GIDA. 1 hit. [Graphical view] [Entries sharing at least one domain]
TIGRFAMs	TIGR00137. gid_trmFO. 1 hit.
PROSITE	PS01280. GIDA_1. False negative. PS01281. GIDA_2. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

TRMFO_ANADE

Accession

Primary (citable) accession number: Q2ILE0

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 2, 2008
Last sequence update:	March 7, 2006
Last modified:	June 16, 2009
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)