Reviewed, UniProtKB/Swiss-Prot Q2IGB1 (SYS_ANADE)

Names and origin

Protein names

Recommended name:
    Seryl-tRNA synthetase
    EC=6.1.1.11
Alternative name(s):
    Seryl-tRNA(Ser/Sec) synthetase
    Serine--tRNA ligase
      Short name=SerRS

Gene names

Name:	serS
Ordered Locus Names:	Adeh_3853

Organism

Anaeromyxobacter dehalogenans (strain 2CP-C) [Complete proteome] [HAMAP]

Taxonomic identifier

290397 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Myxococcales › Cystobacterineae › Myxococcaceae › Anaeromyxobacter

Protein attributes

Sequence length	435 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) By similarity. HAMAP MF_00176
Catalytic activity	ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser). HAMAP MF_00176 ATP + L-serine + tRNA(Sec) = AMP + diphosphate + L-seryl-tRNA(Sec). HAMAP MF_00176
Pathway	Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1. HAMAP MF_00176
Subunit structure	Homodimer. The tRNA molecule binds across the dimer By similarity. HAMAP MF_00176
Subcellular location	Cytoplasm By similarity HAMAP MF_00176.
Domain	Consists of two distinct domains, a catalytic core and a N-terminal extension that is involved in tRNA binding By similarity. HAMAP MF_00176
Sequence similarities	Belongs to the class-II aminoacyl-tRNA synthetase family. Type-1 seryl-tRNA synthetase subfamily.

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm
Ligand	ATP-binding Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	selenocysteine biosynthetic process Inferred from electronic annotation. Source: HAMAP seryl-tRNA aminoacylation Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP serine-tRNA ligase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 435	435	Seryl-tRNA synthetase HAMAP MF_00176		PRO_1000019608
Regions
	Nucleotide binding	264 – 266	3	ATP By similarity
	Nucleotide binding	351 – 354	4	ATP By similarity
	Region	233 – 235	3	Serine binding By similarity
Sites
	Binding site	287	1	Serine By similarity
	Binding site	386	1	Serine By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q2IGB1-1 [UniParc]. Last modified March 7, 2006. Version 1. Checksum: 5FF67C5F2903210C	FASTA	435	48,325
	10 20 30 40 50 60 MLDLKAVAAD FESFERRLAR RGEGAVQALA PVKPLAARRR ELNVLLEKQK KEQADANARI 70 80 90 100 110 120 RELARTDKGA VEGARASLRA LGDEVKKTEA ELGEVEAELT RLLMLVPNPP HDSVPDGKDE 130 140 150 160 170 180 HDNVVVKTWG EQKAYGFTPK PHWEVGEALG VLEWQQAAKL SGSRFTILKG AAARLERAIV 190 200 210 220 230 240 SFFIDVHTSR GYTEILPPYL VTGETMTGTG QLPKFEEDLF KTTNEPPMYL IPTAEVPVTN 250 260 270 280 290 300 MHRDEIFEAS AMPVSYCAFS PCFRAEAGSA GRDTRGIMRQ HQFHKVELVK LSKAEESYAE 310 320 330 340 350 360 HEKMLDDACE VLRRLGLHHR VSLLCTGDMG FSSAKTYDIE VWCPGQGAYR EISSVSNCED 370 380 390 400 410 420 FQARRIRVRY RGENGKPRLA HTLNGSGVAV GRTIVAILEQ CQEADGTVVI PEPLRPYMGG 430 LERIAAETFP RGVER

References

[1]

"Complete sequence of Anaeromyxobacter dehalogenans 2CP-C." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M. , Kyrpides N., Anderson I., Sanford R.A., Ritalahti K.M., Thomas H.S., Kirby J.R., Zhulin I.B., Loeffler F.E., Richardson P. Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000251 Genomic DNA. Translation: ABC83619.1.
RefSeq	YP_467056.1.
3D structure databases
SMR	Q2IGB1. Positions 1-425.
ModBase	Search...
Protein-protein interaction databases
STRING	Q2IGB1.
Genome annotation databases
GeneID	3887795.
GenomeReviews	Gene locus Adeh_3853 in contig CP000251_GR.
KEGG	ade:Adeh_3853.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0172.
HOGENOM	HBG629391.
OMA	EEWRELK.
Enzyme and pathway databases
BioCyc	ADEH290397:ADEH_3853-MONOMER.
Family and domain databases
HAMAP	MF_00176. Ser_tRNA_synth_type1. [Tree]
InterPro	IPR002314. aa-tRNA-synt_IIb_cons-dom. IPR006195. aa-tRNA-synth_II_cons-dom. IPR002317. Ser-tRNA-synth_IIa. IPR018156. Ser-tRNA-synth_IIa_C. IPR015866. Ser-tRNA-synth_IIa_N. IPR010978. tRNA_bd_arm. [Graphical view]
Gene3D	G3DSA:1.10.287.40. Ser-tRNA-synth_IIa_N. 1 hit.
PANTHER	PTHR11778. tRNA-synt_ser. 1 hit.
Pfam	PF02403. Seryl_tRNA_N. 1 hit. PF00587. tRNA-synt_2b. 1 hit. [Graphical view]
PIRSF	PIRSF001529. Ser-tRNA-synth_IIa. 1 hit.
PRINTS	PR00981. TRNASYNTHSER.
TIGRFAMs	TIGR00414. serS. 1 hit.
PROSITE	PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

SYS_ANADE

Accession

Primary (citable) accession number: Q2IGB1

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	March 7, 2006
Last modified:	February 9, 2010
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)