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Q2HJ44

- GLD2_BOVIN

UniProt

Q2HJ44 - GLD2_BOVIN

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Protein
Poly(A) RNA polymerase GLD2
Gene
PAPD4
Organism
Bos taurus (Bovine)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Cytoplasmic poly(A) RNA polymerase that adds successive AMP monomers to the 3'-end of specific RNAs, forming a poly(A) tail. In contrast to the canonical nuclear poly(A) RNA polymerase, it only adds poly(A) to selected cytoplasmic mRNAs. Does not play a role in replication-dependent histone mRNA degradation By similarity.

Catalytic activityi

ATP + RNA(n) = diphosphate + RNA(n+1).

Cofactori

Magnesium or manganese By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi213 – 2131Magnesium or manganese; catalytic By similarity
Metal bindingi215 – 2151Magnesium or manganese; catalytic By similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
  3. polynucleotide adenylyltransferase activity Source: UniProtKB

GO - Biological processi

  1. RNA polyadenylation Source: UniProtKB
  2. histone mRNA catabolic process Source: UniProtKB
  3. mRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Transferase

Keywords - Biological processi

mRNA processing

Keywords - Ligandi

ATP-binding, Magnesium, Manganese, Metal-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Poly(A) RNA polymerase GLD2 (EC:2.7.7.19)
Alternative name(s):
PAP-associated domain-containing protein 4
Gene namesi
Name:PAPD4
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
ProteomesiUP000009136: Chromosome 10

Subcellular locationi

Cytoplasm By similarity. Nucleus By similarity

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
  2. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 484484Poly(A) RNA polymerase GLD2
PRO_0000341548Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei62 – 621Phosphoserine By similarity
Modified residuei69 – 691Phosphoserine By similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PRIDEiQ2HJ44.

Interactioni

Subunit structurei

Interacts with CPEB1, CPEB2, CPSF1 and PABPC1 By similarity.

Structurei

3D structure databases

ProteinModelPortaliQ2HJ44.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini386 – 44055PAP-associated
Add
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi76 – 9217Nuclear localization signal Reviewed prediction
Add
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG5260.
GeneTreeiENSGT00550000074490.
HOGENOMiHOG000088606.
HOVERGENiHBG097533.
InParanoidiQ2HJ44.
KOiK14079.
OMAiCVEFDLN.
OrthoDBiEOG7DRJ2S.
TreeFamiTF315661.

Family and domain databases

InterProiIPR002058. PAP_assoc.
[Graphical view]
PfamiPF03828. PAP_assoc. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q2HJ44-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MFPNSILGRP PFTPNHQQHN NFFALSPSLY SHQQLIDAQF SFHNADLSRA    50
VSLQQLTYGN VSPIQTSTSP LFRGRKRLSD EKNLPLDGKR QRFHSPHQEP 100
TIVNHIVPLS DERRYSMSPL FHTHYVPDIV RCVPPFREIS ILEPREITLP 150
EAKDKLSQQI LELFEACQQQ VSDLKKKELC RTELQREIQL LFPQSRLFLV 200
GSSLNGFGTR SSDGDLCLVV KEEPCFFQVN QKTEARHILT LVHKHFCTRL 250
SGYIERPQLI RAKVPIVKFR DKVSCVEFDL NVNNIVGIRN TFLLRTYAYL 300
ENRVRPLVLV IKKWASHHDI NDASRGTLSS YSLVLMVLHY LQTLPEPILP 350
SIQKIYPESF SPSIQLHLVH QAPCNVPPYL SKNESNLGDL LLGFLKYYAT 400
EFDWNSQMIS VREAKAIPRP DGIEWRNKYI CVEEPFDGTN TARAVHEKQK 450
FDMIKDQFLK SWHRLKNRKD LNSILPLRAA ILKR 484
Length:484
Mass (Da):56,051
Last modified:March 21, 2006 - v1
Checksum:iEA2345615C844818
GO
Isoform 2 (identifier: Q2HJ44-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     157-163: SQQILEL → NKRTLTW
     164-484: Missing.

Note: No experimental confirmation available.

Show »
Length:163
Mass (Da):18,919
Checksum:i5B86ED9719BCA532
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei157 – 1637SQQILEL → NKRTLTW in isoform 2.
VSP_034322
Alternative sequencei164 – 484321Missing in isoform 2.
VSP_034323Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BT025394 mRNA. Translation: ABF57350.1.
BC113319 mRNA. Translation: AAI13320.1.
RefSeqiNP_001039826.1. NM_001046361.1. [Q2HJ44-1]
XP_005211397.1. XM_005211340.1. [Q2HJ44-1]
XP_005211398.1. XM_005211341.1. [Q2HJ44-1]
XP_005211399.1. XM_005211342.1. [Q2HJ44-1]
UniGeneiBt.92095.

Genome annotation databases

EnsembliENSBTAT00000008885; ENSBTAP00000008885; ENSBTAG00000006751. [Q2HJ44-1]
ENSBTAT00000048886; ENSBTAP00000045850; ENSBTAG00000006751. [Q2HJ44-2]
GeneIDi533862.
KEGGibta:533862.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BT025394 mRNA. Translation: ABF57350.1 .
BC113319 mRNA. Translation: AAI13320.1 .
RefSeqi NP_001039826.1. NM_001046361.1. [Q2HJ44-1 ]
XP_005211397.1. XM_005211340.1. [Q2HJ44-1 ]
XP_005211398.1. XM_005211341.1. [Q2HJ44-1 ]
XP_005211399.1. XM_005211342.1. [Q2HJ44-1 ]
UniGenei Bt.92095.

3D structure databases

ProteinModelPortali Q2HJ44.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q2HJ44.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSBTAT00000008885 ; ENSBTAP00000008885 ; ENSBTAG00000006751 . [Q2HJ44-1 ]
ENSBTAT00000048886 ; ENSBTAP00000045850 ; ENSBTAG00000006751 . [Q2HJ44-2 ]
GeneIDi 533862.
KEGGi bta:533862.

Organism-specific databases

CTDi 167153.

Phylogenomic databases

eggNOGi COG5260.
GeneTreei ENSGT00550000074490.
HOGENOMi HOG000088606.
HOVERGENi HBG097533.
InParanoidi Q2HJ44.
KOi K14079.
OMAi CVEFDLN.
OrthoDBi EOG7DRJ2S.
TreeFami TF315661.

Miscellaneous databases

NextBioi 20876175.

Family and domain databases

InterProi IPR002058. PAP_assoc.
[Graphical view ]
Pfami PF03828. PAP_assoc. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
  2. NIH - Mammalian Gene Collection (MGC) project
    Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Strain: Hereford.
    Tissue: Uterus.

Entry informationi

Entry nameiGLD2_BOVIN
AccessioniPrimary (citable) accession number: Q2HJ44
Secondary accession number(s): Q1JPF9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: March 21, 2006
Last modified: July 9, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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