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Protein
Submitted name:

Transcriptional regulator, TetR family

Gene

Saro_0558

Organism
Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciNARO279238:GHBU-563-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, TetR familyImported
Gene namesi
Ordered Locus Names:Saro_0558Imported
OrganismiNovosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199)Imported
Taxonomic identifieri279238 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeNovosphingobium
Proteomesi
  • UP000009134 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi279238.Saro_0558.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2RASX-ray1.80A/B1-211[»]
ProteinModelPortaliQ2GAW8.
SMRiQ2GAW8.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ2GAW8.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 69HTH tetR-type DNA-bindingInterPro annotationAdd BLAST61

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108XYN. Bacteria.
ENOG4111Q37. LUCA.
HOGENOMiHOG000127123.
OMAiPDIRIME.
OrthoDBiPOG091H02BD.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2GAW8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSGTEHDA MRARLVDVAQ AIVEERGGAG LTLSELAARA GISQANLSRY
60 70 80 90 100
FETREDLMEA IADYWFHPMV EIMEDVLASD LPPRRKMYEF FARRFVVMRR
110 120 130 140 150
KWEADPVKLQ TYIEVGNDYF EQVRSYIDLA DHYLGEIIGE AMSDGAFSGL
160 170 180 190 200
EVDETISLVN QMCAPYCALN TMTTFMERLS EDKLARIVDA VFDGLSAQDR
210
GARSLTGLRA A
Length:211
Mass (Da):23,712
Last modified:March 21, 2006 - v1
Checksum:iE902BCB9C6872DAC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000248 Genomic DNA. Translation: ABD25005.1.
RefSeqiWP_011444219.1. NC_007794.1.

Genome annotation databases

EnsemblBacteriaiABD25005; ABD25005; Saro_0558.
KEGGinar:Saro_0558.
PATRICi22783734. VBINovAro50627_0578.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000248 Genomic DNA. Translation: ABD25005.1.
RefSeqiWP_011444219.1. NC_007794.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2RASX-ray1.80A/B1-211[»]
ProteinModelPortaliQ2GAW8.
SMRiQ2GAW8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi279238.Saro_0558.

Protocols and materials databases

DNASUi3918688.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD25005; ABD25005; Saro_0558.
KEGGinar:Saro_0558.
PATRICi22783734. VBINovAro50627_0578.

Phylogenomic databases

eggNOGiENOG4108XYN. Bacteria.
ENOG4111Q37. LUCA.
HOGENOMiHOG000127123.
OMAiPDIRIME.
OrthoDBiPOG091H02BD.

Enzyme and pathway databases

BioCyciNARO279238:GHBU-563-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ2GAW8.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ2GAW8_NOVAD
AccessioniPrimary (citable) accession number: Q2GAW8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2006
Last sequence update: March 21, 2006
Last modified: November 30, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.