Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Transcriptional regulator, TetR family

Gene

Saro_0558

Organism
Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi32 – 51H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Enzyme and pathway databases

BioCyciNARO279238:GHBU-563-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, TetR familyImported
Gene namesi
Ordered Locus Names:Saro_0558Imported
OrganismiNovosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199)Imported
Taxonomic identifieri279238 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeNovosphingobium
Proteomesi
  • UP000009134 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi279238.Saro_0558.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2RASX-ray1.80A/B1-211[»]
ProteinModelPortaliQ2GAW8.
SMRiQ2GAW8.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ2GAW8.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 69HTH tetR-typeInterPro annotationAdd BLAST61

Phylogenomic databases

eggNOGiENOG4108XYN. Bacteria.
ENOG4111Q37. LUCA.
HOGENOMiHOG000127123.
OMAiPDIRIME.
OrthoDBiPOG091H02BD.

Family and domain databases

InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR001647. HTH_TetR.
PfamiView protein in Pfam
PF00440. TetR_N. 1 hit.
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS50977. HTH_TETR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2GAW8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSGTEHDA MRARLVDVAQ AIVEERGGAG LTLSELAARA GISQANLSRY
60 70 80 90 100
FETREDLMEA IADYWFHPMV EIMEDVLASD LPPRRKMYEF FARRFVVMRR
110 120 130 140 150
KWEADPVKLQ TYIEVGNDYF EQVRSYIDLA DHYLGEIIGE AMSDGAFSGL
160 170 180 190 200
EVDETISLVN QMCAPYCALN TMTTFMERLS EDKLARIVDA VFDGLSAQDR
210
GARSLTGLRA A
Length:211
Mass (Da):23,712
Last modified:March 21, 2006 - v1
Checksum:iE902BCB9C6872DAC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000248 Genomic DNA. Translation: ABD25005.1.
RefSeqiWP_011444219.1. NC_007794.1.

Genome annotation databases

EnsemblBacteriaiABD25005; ABD25005; Saro_0558.
KEGGinar:Saro_0558.

Similar proteinsi

Entry informationi

Entry nameiQ2GAW8_NOVAD
AccessioniPrimary (citable) accession number: Q2GAW8
Entry historyiIntegrated into UniProtKB/TrEMBL: March 21, 2006
Last sequence update: March 21, 2006
Last modified: September 27, 2017
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported