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Q2G7S5

- GLGB_NOVAD

UniProt

Q2G7S5 - GLGB_NOVAD

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene
glgB, Saro_1658
Organism
Novosphingobium aromaticivorans (strain DSM 12444 / F199)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei404 – 4041Nucleophile By similarity
Active sitei457 – 4571Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciNARO279238:GHBU-1683-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name:
BE
Gene namesi
Name:glgB
Ordered Locus Names:Saro_1658
OrganismiNovosphingobium aromaticivorans (strain DSM 12444 / F199)
Taxonomic identifieri279238 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeNovosphingobium
ProteomesiUP000009134: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7217211,4-alpha-glucan branching enzyme GlgBUniRule annotationPRO_0000260673Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi279238.Saro_1658.

Structurei

3D structure databases

ProteinModelPortaliQ2G7S5.
SMRiQ2G7S5. Positions 112-720.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiISEGRHE.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2G7S5-1 [UniParc]FASTAAdd to Basket

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MKPPASAIDA LLDGTHADPF SLLGIHEGPD GAFARAVLPG AEEAVAWSLS    50
GKKLGKLSRV DGRGLFEGKV KGPRQPVRYA CKADGHEWLV TDPYSFGPVL 100
GPLDDFLIAE GTHLRLFDKM GAHLIEHEGA RGVHFAVWAP NARLVSVVGD 150
FNDWDHRRHP MRRRADIGVW EIFIPDIGEH RAYKYRIVGH DGGVLPLKAD 200
PYALAAEFRP STASLTAHPV KMDWADAAHR AHWASVDARR EPMSIYEVHP 250
GSWQKPHEEG FHTWDELADR LIPYVAEMGF THIEFLPVSE HPYDPSWGYQ 300
TTGLYAPSAR FGPPEGFARF VDGAHRAGIS VLIDWVPAHF PTDEHGLVRF 350
DGTALYEHED PRLGFHPDWN TLIYNFGRRE VVSFLVNNAL FWAERYHVDG 400
LRVDAVASML YRDYSRKAGE WIPNAEGGRE NWEAVEFLKA MNRAVYGSHA 450
GFLTIAEEST AWPGVSKPAF DGAPRENLGF GFKWNMGFMH DTLKYMAREP 500
IHRRYHHDEI TFGLMYAFSE NFVLPLSHDE VVHGKGSLLN KMSGDDWQKF 550
ANLRAYYGLM WGYPGKKLLF MGQEFAQRRE WSEARALDWD LLQAPAHEGI 600
RRWVRDLNRV YASRPALHAR DCEPEGFEWL VVDDAEASIF AWLRKAPGAR 650
PVAVICNMTP QVHDHYRLPL PLDGEWREVL NSDAEDYGGS GIGNLGKVTA 700
EQGAAFVVLP PLATLMLEFE G 721
Length:721
Mass (Da):81,220
Last modified:March 21, 2006 - v1
Checksum:iE8921459EB4728D2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000248 Genomic DNA. Translation: ABD26098.1.
RefSeqiYP_496932.1. NC_007794.1.

Genome annotation databases

EnsemblBacteriaiABD26098; ABD26098; Saro_1658.
GeneIDi3918767.
KEGGinar:Saro_1658.
PATRICi22785994. VBINovAro50627_1692.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000248 Genomic DNA. Translation: ABD26098.1 .
RefSeqi YP_496932.1. NC_007794.1.

3D structure databases

ProteinModelPortali Q2G7S5.
SMRi Q2G7S5. Positions 112-720.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 279238.Saro_1658.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABD26098 ; ABD26098 ; Saro_1658 .
GeneIDi 3918767.
KEGGi nar:Saro_1658.
PATRICi 22785994. VBINovAro50627_1692.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi ISEGRHE.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci NARO279238:GHBU-1683-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 12444 / F199.

Entry informationi

Entry nameiGLGB_NOVAD
AccessioniPrimary (citable) accession number: Q2G7S5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: March 21, 2006
Last modified: June 11, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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