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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Saro_1695

Organism
Novosphingobium aromaticivorans (strain DSM 12444 / F199)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNARO279238:GHBU-1720-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Saro_1695Imported
OrganismiNovosphingobium aromaticivorans (strain DSM 12444 / F199)Imported
Taxonomic identifieri279238 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeNovosphingobium
ProteomesiUP000009134 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi279238.Saro_1695.

Structurei

3D structure databases

ProteinModelPortaliQ2G7N8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2G7N8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRNDPLAAY NAKRDFARTA EPAGKRKSSA TGNLFIVQKH DATRLHWDFR
60 70 80 90 100
MEVDGVLKSW AVTRGPSPDP DDKRLAVQTE DHPLEYARFE GIIPEGEYGG
110 120 130 140 150
GTVMLWDKGT WEPVEGKSAK DLEKGHLHFR LEGERMKGEW LLVRLKRRGN
160 170 180 190 200
EKRDNWLLRK LDDAYAGQGD QLVERGLTSV LTGRTMAEIA SDKAGSHSLK
210 220 230 240 250
GKRGKAFASV MEEAGTHNRK VGKARGKAPS RARRNAPLPA FQPVQLATLV
260 270 280 290 300
DTVPDGRQWL YEIKFDGYRA LVAVRGTEVR VFTRSGLDWT EKFAPLARHL
310 320 330 340 350
AGLKLPSCLI DGEIVAADAD GNPDFSRLQA VLKRGHGEQG EGDALSFHAF
360 370 380 390 400
DLLELEGEDL KPLPNVERKQ KLAALLAGVS PPIHVADHII GGGEKLLGAL
410 420 430 440 450
CGAGQEGIIC KRADAAYAGK RTQNWLKVKC VARQEFIVVG FTRSSARRRP
460 470 480 490 500
FASLLLAQRE GKALVYKGKV GTGFDEDLLQ DLATRFEALK VDEGPLDVPI
510 520 530 540 550
TEARGVTWLK PELVAEIAFA EFTAEGRVRH ASFVGLREDK KAADVVPERP
560 570 580 590 600
APLVVQPEIV PISNRERVIF PESGQTKGDL ADYYAAMAPA MLPFIANRPV
610 620 630 640 650
SLVRCPQGRA RHCFFQKHDS GSFGEHVHHV PIREKDGNEE EYLFVSDAAG
660 670 680 690 700
ILSCVQMGTI EFHGWCSLAS DVEAPERMVI DLDPDEGLDF NDVKRAARDI
710 720 730 740 750
RDRLSDLGLV SFAMLSGGKG VHVVVPLRPD HTWEAHASFA ERFARALALA
760 770 780 790 800
EPDRYVATMS KARRKGRIFI DWLRNRRGST AVMPYSARAR ANAPVAVPIA
810 820 830 840
WEELDDFANA HPFCIGDTAG LLKRSEGKSL RGWGMAQQSL PDV
Length:843
Mass (Da):93,005
Last modified:March 21, 2006 - v1
Checksum:iCAED803A93AA2AD5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000248 Genomic DNA. Translation: ABD26135.1.
RefSeqiWP_011445345.1. NC_007794.1.

Genome annotation databases

EnsemblBacteriaiABD26135; ABD26135; Saro_1695.
KEGGinar:Saro_1695.
PATRICi22786070. VBINovAro50627_1730.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000248 Genomic DNA. Translation: ABD26135.1.
RefSeqiWP_011445345.1. NC_007794.1.

3D structure databases

ProteinModelPortaliQ2G7N8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi279238.Saro_1695.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD26135; ABD26135; Saro_1695.
KEGGinar:Saro_1695.
PATRICi22786070. VBINovAro50627_1730.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciNARO279238:GHBU-1720-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 12444 / F199Imported.

Entry informationi

Entry nameiQ2G7N8_NOVAD
AccessioniPrimary (citable) accession number: Q2G7N8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 21, 2006
Last sequence update: March 21, 2006
Last modified: July 22, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.