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Q2G743 (Q2G743_NOVAD) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alpha amylase, catalytic region EMBL ABD26330.1
Gene names
Ordered Locus Names:Saro_1890
OrganismNovosphingobium aromaticivorans (strain DSM 12444) [Complete proteome] [HAMAP]
Taxonomic identifier279238 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Sphingomonadales › Sphingomonadaceae › Novosphingobium

Protein attributes

Sequence length609 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABD26330.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323 Potential EMBL ABD26330.1
Chain24 – 609586 Potential EMBL ABD26330.1
PRO_5000106286

Sequences

Sequence LengthMass (Da)Tools
Q2G743 [UniParc].

Last modified March 21, 2006. Version 1.
Checksum: A5D0E1D061AAC7B8

FASTA60966,227
        10         20         30         40         50         60 
MRRISLISAL ALVLSLGQPA LADVPLAEVR ARPAAGEVVY FLLPDRFDNG DRKNDLGGLK 

        70         80         90        100        110        120 
GDRLKTGFDP SAKGFYHGGD IKGLLSRLDY LQDMGVTALW VAPVFRNKPV QGAPGQESAG 

       130        140        150        160        170        180 
YHGYWVTDFT RIDPHFGSNA DFKALVDAAH ARGIKVYMDI IANHTADVIH YADGDYSYRN 

       190        200        210        220        230        240 
RADWPYSRKG GLSGKAINQG FAGDEDSSAA NFAKLTDPGA AYQPLIDPAE RNVKVPAWLN 

       250        260        270        280        290        300 
DPIYYHNRGN TTFTGEDSRF GDFAGLDDLF TEHPRVRAGM VEIYADWIRR FGIDGYRVDT 

       310        320        330        340        350        360 
AKHVDPGFWQ VFTPEIRKVA AEAGIPNFAV FAEIANGGSD PGTIARHTRR DGFPQVLDFA 

       370        380        390        400        410        420 
FQEAVRDLVG KGKATRVLAE TFDGDVLYEG GEAAALAMPT FLGNHDMGRF STAVRQDRPG 

       430        440        450        460        470        480 
ISDKELLDRV ALAHVMLMTL RGSPVIYYGD EQGFVGDGGD QDAREDMFPS RTASYNDNRL 

       490        500        510        520        530        540 
IGTASTTAAD NFDEGHPLYR LIRDLAVLRK AHPALARGRQ VTRTYSEGPG LFSVSRFDPE 

       550        560        570        580        590        600 
TGTEYLIAFN TSDKPLRATS VIGASASGLE GLYGQCPLSV AAPGSVLLDL PAFGSVVCRV 


ILSPESSVR

« Hide

References

[1]"Complete sequence of Novosphingobium aromaticivorans DSM 12444."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Kyrpides N., Ivanova N. expand/collapse author list , Fredrickson J., Balkwill D., Romine M.F., Richardson P.
Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 12444.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000248 Genomic DNA. Translation: ABD26330.1.
RefSeqYP_497164.1. NC_007794.1.

3D structure databases

ProteinModelPortalQ2G743.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ2G743.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3917111.
GenomeReviewsGene locus Saro_1890 in contig CP000248_GR.
KEGGnar:Saro_1890.
NMPDRfig|48935.1.peg.1719.
PATRIC22786480. VBINovAro50627_1935.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHBG400745.
OMAFHIFGEV.
PhylomeDBQ2G743.
ProtClustDBCLSK890899.

Family and domain databases

InterProIPR015902. Alpha_amylase.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 2 hits.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ2G743_NOVAD
AccessionPrimary (citable) accession number: Q2G743
Entry history
Integrated into UniProtKB/TrEMBL: March 21, 2006
Last sequence update: March 21, 2006
Last modified: December 14, 2011
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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